Ncom020411.1
Basic Information
- Insect
- Neria commutata
- Gene Symbol
- -
- Assembly
- GCA_963457695.1
- Location
- OY735249.1:25008581-25013325[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.6e-12 5.9e-09 35.9 0.0 1 44 202 245 202 246 0.93 2 3 0.34 5.6e+02 0.8 0.1 17 39 265 287 258 291 0.81 3 3 9.6e-09 1.6e-05 25.0 0.1 7 42 323 358 319 361 0.81
Sequence Information
- Coding Sequence
- ATGTCTGAAGCGGAGAACCAAGAGACCAACGGAAGCGCAGCCGACGTTCCAGAAATCGAATTAATTATTAAGGAAGAATATTTGTATACTGACGAACTCGTTAAGGAAGAAACCAAAGAGGAAATACGCGTTTTTGATGCACATGCTAAGGTCCCTCTTGAGACTGCATCTTTCGAACACTCCGACGCAGGGGAGGTACGCACCCTTTATGTGGCATATCCCAAACAGGAGCTGGACGAATTGCAAGTGTACACGCATGCTGTTGTAACACACCCGATTGATCAAGAGCTGAAAGCAATTGAAACGGCGGATATGGGGACAAATACCATTGGCGTTGCTTCGGGGTCTGTGCAGCAGGCGCTAGTTAAAAGGGAAAAGCGTTCCGGCACCGCCAGTCCAACGGAGCGCGTACAGCAGGATTCAACCAGCGATATTGATTTCGCCAGTGTCGTGGCGGAAGCGTGCGAAGGACTATTCGACAGCATTGAAGATGAACTGCAGCTGCTTTCAACGACACAGCGGTATAATACGTGCGAAGCGATGGGACATAACGTGGCCAGTGGTGTTAGTGGCAAGAGTACCCGTGTGCCGCGAGTTAAAGCAGATCCCGAGGCTGTGCAGCAAGCTGTGAAAGCGGTGCTGGAGGAGGGCATAAGCCTTGGACAGGCGGCCAAGCGGTACAACGTGGTGAAATCAACGATTTGGGCTCGCGTCTCCAAGCATCCTAAGCACCGACGACGGAATTGCAACAGCGAGCTGGCCGGGATTATACACAGCAAGCTGAGCGCGGGTATATCCCTGTCGGAAATATCGCGCTCACTTCATGTTCCCAAGTCGACGGTGCATCAGCACAAGATGCGGCTAACAAAACGCGGCCTGCTATCGCCAGCGGCGATGAATGCCTGCAAGCAAACCGAAGGTGTCAATGATTTGGTTGGCGGGTGTAGCATGCAGCAGCGTTTGGCACAGGCGTATCGTGGCTACCGCGTTAATGGCATGTCGGTGCGCTTCGCCGCAGAGTTCTATGAGTTGCCGCTGACCACTCTATGGCGTTACATCAAACGCAGTCAATCAACCGCGACGGCTGTGCAGAAAGATTTACCTAAAGCGGAAACCTTCGATGAAGTTGACAATGGTCACGGTGCACCTCAAAACAATGACCGAAGCGGGCAACAACAAACTGAAACTTATGACAATACGGAAAATATAAGCCCCAGCGTGGCAGCCGTGAAGCCCGAAATCAATGCCGATGCTCATTTCGAGCAGACGCTGCTCAATCAACTCTTTGAGTAG
- Protein Sequence
- MSEAENQETNGSAADVPEIELIIKEEYLYTDELVKEETKEEIRVFDAHAKVPLETASFEHSDAGEVRTLYVAYPKQELDELQVYTHAVVTHPIDQELKAIETADMGTNTIGVASGSVQQALVKREKRSGTASPTERVQQDSTSDIDFASVVAEACEGLFDSIEDELQLLSTTQRYNTCEAMGHNVASGVSGKSTRVPRVKADPEAVQQAVKAVLEEGISLGQAAKRYNVVKSTIWARVSKHPKHRRRNCNSELAGIIHSKLSAGISLSEISRSLHVPKSTVHQHKMRLTKRGLLSPAAMNACKQTEGVNDLVGGCSMQQRLAQAYRGYRVNGMSVRFAAEFYELPLTTLWRYIKRSQSTATAVQKDLPKAETFDEVDNGHGAPQNNDRSGQQQTETYDNTENISPSVAAVKPEINADAHFEQTLLNQLFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -