Ncom015330.1
Basic Information
- Insect
- Neria commutata
- Gene Symbol
- -
- Assembly
- GCA_963457695.1
- Location
- OY735248.1:5794848-5796467[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-13 1.9e-10 40.8 0.0 5 44 350 389 347 390 0.92 2 4 2.7 4.4e+03 -2.1 0.0 32 45 399 413 399 413 0.89 3 4 0.0042 6.9 6.9 0.0 23 37 415 429 405 435 0.82 4 4 1.1e-16 1.8e-13 50.4 0.0 2 41 456 495 455 497 0.93
Sequence Information
- Coding Sequence
- ATGAATCATCTGAAATGGATGGGACACGCGGCAACAGTTTTTGAGATTCAGAAGAATCTTCGAAATGACCCACAGAGTTGCGAAGTGAATTTGGTAGCTGCTGGCGGTTCTGTGAGGGCACATCGTTTTGTGCTTTCCTCCTGTAGCGACCTGCTGCATAACCTGCTCGCGGATGTTCCCATGGATCAGGAAGCCACCATCGTTGTGCCAGACATACGTGGATCACTGCTCGACAGTGTGCTCGCTTTCATTTATATGGGCGAGACAAATATCACATCGACCAATCTTTCCGAGTTTCTGGAAGCCATTAATATTTTAGGCATAAAATCTGCCATCAGCTTTGAGTGCAACACAGCAGCGTTATCAAGTGCCAGCAATTCTGCTGTCATCCCCTCATCAACCGCAAATTTACCTGTGAAAACAATAAGCGGTTTTCAAATAGGAAATGATGAACTATTGGAACAGGATCATGTTTCTGGACAAAAAATGGAGCATGATCAGAATGAGAATAGTGTTGTGGAGCAGGTGACATCTAACCCCCGTGAGCTTGAATTTTTGGACGTTTACAATGAGCCGCAACATAAAATTACTTACTCCATTGAACACATGCCCGGAACATCAAATGCCAATGAATTCATACTGACGGAAAACGCCGGCACATTCACACTAacacaaaataccaaaatggATAGTGTTGGCACGGACTCGGGGAAAATCGAGGAGACTGAAGAAGACAACGATGAAGCACATATAATTGAGGAATATAGCAGCAGCACGGAGCCGATTATTGAGATCGCGGAAAATGCTGCCCATGCAAATTCTGCAGTCGCAGTTGCAAGTACGAGCGCCCCAGCCCCAGGTGTTGTACAGAtaagacaaaaaattaaaacggtGAAGCTAAAAATGGATACCAGTGCTTCTGATGATATGCATCAAGTTATGGAAAACACTATTGATGCAACGGCTGACCCTATTTCAGTGCTAAACACTTCCAGTGAAAGTTACTCCTCCGCTTACAATGACACGCACGGTAGCGGCGATTCACACCTGGATATGGCCGTGCAGGCAGTAATCGATGAAGGAATCAGCCTTCAAAAagctgcacaaaaatttgaagtttCAAAAACCGTACTATGGCGACGGGTGCGCAAAAACCCTAACTACATGAAAACGGCACGTGAGAATCCATTACTCACACTGGCCTATGAGCGTTTGAAGGGCGGTGAGTCGTTAAAGAACATCAGTCGCGAATTGGACATTCCCATGTCTACTCTGCACCGGCATAAAGTACGGTTGGCACAGCAAGGTCGTTTGCCAGAATATGTAACCTTTAAAAAACGCGACTCCGTATCAAAGGACGAGCTCAGGGAGAAATTAGCTAAGGCTGTGAAGGCGTGTGTTCATGAGGGAATGTCGCAGAATCAAGCCGCCAATTTATTCGCTATACCAAAGAGTACGCTTTGGCGGCATCTGCAGAAACGTGTAGCCGAGGCCGAGTTGTCGCAGAGTATGGAAGCGGAAGAGATAATAAAAGAAGAAGTTATTCTTTCATAA
- Protein Sequence
- MNHLKWMGHAATVFEIQKNLRNDPQSCEVNLVAAGGSVRAHRFVLSSCSDLLHNLLADVPMDQEATIVVPDIRGSLLDSVLAFIYMGETNITSTNLSEFLEAINILGIKSAISFECNTAALSSASNSAVIPSSTANLPVKTISGFQIGNDELLEQDHVSGQKMEHDQNENSVVEQVTSNPRELEFLDVYNEPQHKITYSIEHMPGTSNANEFILTENAGTFTLTQNTKMDSVGTDSGKIEETEEDNDEAHIIEEYSSSTEPIIEIAENAAHANSAVAVASTSAPAPGVVQIRQKIKTVKLKMDTSASDDMHQVMENTIDATADPISVLNTSSESYSSAYNDTHGSGDSHLDMAVQAVIDEGISLQKAAQKFEVSKTVLWRRVRKNPNYMKTARENPLLTLAYERLKGGESLKNISRELDIPMSTLHRHKVRLAQQGRLPEYVTFKKRDSVSKDELREKLAKAVKACVHEGMSQNQAANLFAIPKSTLWRHLQKRVAEAELSQSMEAEEIIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01055360;
- 90% Identity
- iTF_01055360;
- 80% Identity
- iTF_01055360;