Basic Information

Insect: Nephrotoma guestfalica
Gene Symbol: -
Assembly: GCA_963691935.1
Location: OY829915.1:184935994-184937749[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.41 80 5.8 3.9 2 23 242 264 241 264 0.95

2 10 0.052 10 8.6 0.2 6 23 273 290 273 290 0.98

3 10 0.0029 0.56 12.6 5.2 1 23 296 318 296 318 0.99

4 10 5.2e-06 0.001 21.2 2.7 1 23 326 348 326 348 0.99

5 10 8.3e-07 0.00016 23.7 0.8 1 23 354 377 354 377 0.96

6 10 0.054 11 8.6 2.7 2 23 384 406 383 406 0.91

7 10 3.8 7.4e+02 2.8 0.5 2 23 416 436 415 436 0.79

8 10 1.9e-05 0.0037 19.4 0.8 1 23 443 466 443 466 0.96

9 10 4.1e-05 0.0081 18.4 0.8 1 23 471 493 471 493 0.94

10 10 6.9e-06 0.0014 20.8 2.0 1 23 499 522 499 522 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.41	80	5.8	3.9	2	23	242	264	241	264	0.95
2	10	0.052	10	8.6	0.2	6	23	273	290	273	290	0.98
3	10	0.0029	0.56	12.6	5.2	1	23	296	318	296	318	0.99
4	10	5.2e-06	0.001	21.2	2.7	1	23	326	348	326	348	0.99
5	10	8.3e-07	0.00016	23.7	0.8	1	23	354	377	354	377	0.96
6	10	0.054	11	8.6	2.7	2	23	384	406	383	406	0.91
7	10	3.8	7.4e+02	2.8	0.5	2	23	416	436	415	436	0.79
8	10	1.9e-05	0.0037	19.4	0.8	1	23	443	466	443	466	0.96
9	10	4.1e-05	0.0081	18.4	0.8	1	23	471	493	471	493	0.94
10	10	6.9e-06	0.0014	20.8	2.0	1	23	499	522	499	522	0.97

Sequence Information

Coding Sequence: ATGGAAAACGATTCAACCAATTGCCGTTTATGTTTAACCATTCatacatcaaatttatttaatatattcgaCGAACAAAGTGGCAACGAAAGTATTGCGGCTGTGCTaggaaaacatttttggtttcaaATCAAAGAagatgatgttaataaatatatttgcgcTATATGTTGGTCAAAAGTGGCTGATTTTCATTCGTTTTACACCCAAGTCTATCATCTACACAATGAGTTATACTCAAAGGCACAGGAAATTGTTAAAgtggaaatggaaattgatagtaccgaggaatcgacaactaattttgaggtaaataatttggaatctaagccaaatttaaaaaatgaggcATCCGAAACGATACCCAGTGATACAAGTGAATCCGATGATGATTATTCTGATAAAAGTTATGATCCTAAAATGCATTCCACGATTCATGATGACAATTCTTCCAGTAATGACGACTTTCTGATAAACTCTCGTTcgaaaaaaaacagaatatcGAAGAATTCTACCCAAAGTTCGAACAAAAAAGCCACAACTTTTGGAGGCTCTATTGATTGTGATAGTGGCGATACAACTGACGATAATGATCGTCATAATGCCAACCCTCGTCTTAAATCAATAAGATTACAAACCACCTCTAGAAAATGTTCGAAAAATAATGTGAAAGATGTACTTAGGGATgaggaaaataaacaaattcaggAACATTTTACAATGGAATGTAAACTATGCTCGATTCGTTgtgatacatttaaaaattttaaattgcactataaaaatgaacatAAAAGGAAAGGGTATATACGGTGTTGTAATCGAAACTTCACGGAACAGACCTTACTGGTTCAGCACATTCAATATCATTTAAATCCCGAATTATTCAAatgcGATCTGTGTTTCAAAAACTTCGCCAACCAGCGTAGTTTGCAGTGCCATCTTAGAAGGCACCGAGCTTTGGagaaaaaatcttttaaatgtaCCGTGTGTTCGAAATGTTTTAGAATTAAAGCTAACTTAGAAAATCATTTAATCACTCACAATAgtcagaaaaattatatatgcgACGATTGTGGTAAATCATTTTACACGGAGAATTCGCTTCAAACGCATATCAAATATAATCACGAAAACACAAGTAATTGCATCTGTGATGTGTGTGGAAAGGAATTTCGCATCAAATCAGCTTGCGCCAAACATAAAAGAGATGTTCATGATAATATAATTGAATTGCCGAAAGTAAAATGCAATGTTTGTGGCATATGGTTGAAACAGGTGTCTTTAAGGGAGCATATGATAGCACATGAAGATAGCAAAGTTGATCATATCTGTAGCATTTGTGGAAAACAATCACCTAATCGGAAAGCCCTCCGCAAACATATAAATACTGTGCATTCGGATAAAGTGTACAAGTGCCTGGTTTGCGATAAAACATTTAAGAAAGAAATAAGTCTGAAAGAGCATATGCCCACACATACTGGTGTTTCGTTATATTCATGTCCGCATTGCCCGAAAAAGTTTAATTCATCTGGAAACATGTATAATCATAGAAAAGTAATTCATGTAAAAGAGTGGGAGGAACACGAACGTCTTAAAGCGGCCGGTGTTTTATAG
Protein Sequence: MENDSTNCRLCLTIHTSNLFNIFDEQSGNESIAAVLGKHFWFQIKEDDVNKYICAICWSKVADFHSFYTQVYHLHNELYSKAQEIVKVEMEIDSTEESTTNFEVNNLESKPNLKNEASETIPSDTSESDDDYSDKSYDPKMHSTIHDDNSSSNDDFLINSRSKKNRISKNSTQSSNKKATTFGGSIDCDSGDTTDDNDRHNANPRLKSIRLQTTSRKCSKNNVKDVLRDEENKQIQEHFTMECKLCSIRCDTFKNFKLHYKNEHKRKGYIRCCNRNFTEQTLLVQHIQYHLNPELFKCDLCFKNFANQRSLQCHLRRHRALEKKSFKCTVCSKCFRIKANLENHLITHNSQKNYICDDCGKSFYTENSLQTHIKYNHENTSNCICDVCGKEFRIKSACAKHKRDVHDNIIELPKVKCNVCGIWLKQVSLREHMIAHEDSKVDHICSICGKQSPNRKALRKHINTVHSDKVYKCLVCDKTFKKEISLKEHMPTHTGVSLYSCPHCPKKFNSSGNMYNHRKVIHVKEWEEHERLKAAGVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01053836;
90% Identity: -
80% Identity: -