Ngue003793.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829913.1:56652076-56654840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00088 0.17 14.2 4.5 1 23 64 86 64 86 0.98 2 17 0.023 4.6 9.7 1.3 1 23 92 115 92 115 0.94 3 17 0.017 3.3 10.1 0.3 1 21 140 160 140 161 0.89 4 17 0.1 20 7.7 0.9 1 23 169 191 169 191 0.97 5 17 0.0012 0.24 13.8 0.9 3 23 199 219 197 219 0.96 6 17 2.6e-05 0.0051 19.0 0.4 1 23 225 247 225 247 0.97 7 17 8.4 1.6e+03 1.7 0.4 1 21 253 273 253 274 0.91 8 17 0.013 2.5 10.6 1.7 1 23 538 561 538 561 0.96 9 17 0.014 2.8 10.4 0.2 1 23 599 622 599 622 0.91 10 17 0.5 98 5.5 0.6 1 23 628 650 628 650 0.95 11 17 0.013 2.5 10.5 0.3 2 23 659 681 658 681 0.94 12 17 0.0079 1.6 11.2 0.4 1 23 684 707 684 707 0.93 13 17 0.0011 0.21 14.0 0.3 2 22 719 739 718 739 0.93 14 17 0.00018 0.035 16.4 2.3 1 23 747 769 747 769 0.98 15 17 3.5e-05 0.007 18.6 1.3 3 23 777 797 775 797 0.97 16 17 0.0001 0.02 17.2 0.4 1 23 803 825 803 825 0.97 17 17 0.79 1.6e+02 4.9 1.0 6 23 836 853 833 853 0.96
Sequence Information
- Coding Sequence
- ATGACGAATAGTAACAAGGAATCAAGTGATGTGGTTGAAAAACCTGATTTTATTATCGAGGggaataaatattgttgtttattcTGTGGCAACAAATACTTGAGTCGGGCACGTTGTGAGACCCATGTAAGATTGTGTGATAACCGAGATGAATCCACAGAGTGCATCGAAGTTAACGGAACTCCAAAGTTCCAATGCACCGAGTGTAGCCGTTACTTTAAGCATTTGGTTGGTTTGAAAAAACATGAAAAGAAGCATAAACCGCCTGGTGGATATATATGTTGTCACTGTGGTAAACGGTATATAAGCGAGGCGGCCCGAGCCGAGCATCAGAAGGCAGACCATAAAACTGGGAAGCTACCAAAAATTGTGAAAGTAGAAACGTTTAGTGAAAGTAATGTTAATCCACTTGAGGCTTACCGGTGCAATGATTGTGGCGCTATGTTTcgcaaagaaaaaatatatcagACCCATATAAGTACCAAATGCGGAACCGAAAAACGATTTGAGTGTGATATTTGCTCTTCCAGATTTCTCACCAAAAATACGCTGTATGCCCATAAACAAATTCACACAGGTGTGAAACGACATCTATGCGACTATTGCGGGGCAAGCTTTTTAAGTAAAGGCCAACTGAAGGTGCATGAACGTTCTCACACGGGTGAGAAACCATTCAAGTGCGAGATCTGTAACAAAGGATTTTCGTATCGCGAAAGTCTAGTAACCCATGCATCAATCCACACTGGAATTAAACCGTATGCTTGCCAAGCTTGTGATTCACGATACTCGTGCATTGGAAATTTAATCAAGCATCGAAGAGCTCGCCCTGATACATGTGGCCTAGCTAAataccaacaaaattataagaTCGCGCCTAGGGCCTGCACAAAAATTAAGCATTTTGTACACGACGCTGACGCTGGGGACACAGAACATAATGAAGAGGCAGAAGAACGACTATCAACATCCCCAGTGGGAAAAACAAGTCCGGCAATATTTGAAAGCCCCCcgaccataaaaaaattttcggaAACGAATATCTCCGATCAGAAACCTATTCTATATCGCATTACCGAAATCACATCAGTTGATCCGCAAATAATCGACTTGCATAACGTGGATGAGATCCGATCCATAaaagatgaaaatattattgttacatTGAAAGATGATTGCCCAGATGAAGCCGCTGATTGTGATGAGGACGATGATTCCGGGGAGACCAAATTGAGTCCGTCGGAGGAATATTTGCAGTATATGCAATCGAACGCGAATAGTGACGACGGTGACGATGAACAGAATTGGTACGATAAAGGAGAAGAGatagaatttgttgaaaatgaaaatggcacAGATGGCACCGCCAACTATGTCTTAGAAATCGAATTACAAAATACGGACGAGCCAGAAGGCCCAGCGACTAATTCAGTATATACAATTATAGAAAACGCGAACGATGAAGATTGCGAGACGCTTATTTTTCATTCGGAACCCGAGAAGTCTACTAGTGATGACATTCTgataaaacatgaaaattccGATAACGATATTGAAGAAGATCAAGAAGAGGCAAATATATCGTCCCCAGAAAAAAGTGGCGCGCCCGGGCTGCACAAATGTACTTTCTGTCCCAAATTGTACATTCAGCAGAATCGATTACGGAGTCACTTGATAATCGATCATGCGCAAAATGTAAACGAAACTGATAGCCGCGAAGAACTCGGAACAGTGGAAGACGCTGGCAACTCCACAGATGGTGAAAGTTCACTTAACGTTCGTACTTCGCTAGACGTACATAAATGTCCGCTTTGtccaaaattgtatatacaaCCGATCAGATTACGAAACCATCTGGTATTAGAGCATAATGCAAACAACGATTACTCATGTAAAGTATGCTATAAATGGTTTAATTCGGAAGGCGaacgaaaaaatcacgaagcaAGCCATGGTAAGGATCACTCTCGCATTCTCAAATGTCCGACTTGTGAATTATACTTTGGATCACTAGACGAACTGGAAACGCATCACAATGAAATTCACTTTTGTTATAAATGTCCAAAATGTTCTACAGTGGTTGATACAATGGATGCGTTAAAATCACACACCACGGAATTTCATAGACCACGAGCCGGtggtaaatcaaaaaatttgaattgcgAATCGTGCAACCGAATGTTTTCAACAAAGGTGGCACTTTCTGATCACCAGAGATCGAATTGTGGTCAGGCACCTCTCTATAAATGTGATATCTGCGAGAAAAGTTATCATAGCGCCGGGAGTCTTAAAACTCATAAAACTATGCACAGCGGGCTAATGCCGTTTGGGTGCAAATACTGCGGAAAATTTTTTCGTACGAAGGGACAAGTTAAAGTGCACGAAAGACAGCACAGTGGCGAAAAACCGTACAAATGTGACGCGTGCCCGAAATCTTTTGCATACCGTGAAAGTCTATTGACACACCAATCTTTACATACGGGGCTCAAACGATTTATGTGCATACCGTGCGGAGCACGTTTTTCCTGTATTTCGAATTTACAATCGCACCGGAAATCTCATAAATTGACGTGCGGGCAACATCCGAATTTTACCAAACCAATCGAATCAGCGATAACAGAGGATAGTAAAATGGAAGTGCTAGtagaataa
- Protein Sequence
- MTNSNKESSDVVEKPDFIIEGNKYCCLFCGNKYLSRARCETHVRLCDNRDESTECIEVNGTPKFQCTECSRYFKHLVGLKKHEKKHKPPGGYICCHCGKRYISEAARAEHQKADHKTGKLPKIVKVETFSESNVNPLEAYRCNDCGAMFRKEKIYQTHISTKCGTEKRFECDICSSRFLTKNTLYAHKQIHTGVKRHLCDYCGASFLSKGQLKVHERSHTGEKPFKCEICNKGFSYRESLVTHASIHTGIKPYACQACDSRYSCIGNLIKHRRARPDTCGLAKYQQNYKIAPRACTKIKHFVHDADAGDTEHNEEAEERLSTSPVGKTSPAIFESPPTIKKFSETNISDQKPILYRITEITSVDPQIIDLHNVDEIRSIKDENIIVTLKDDCPDEAADCDEDDDSGETKLSPSEEYLQYMQSNANSDDGDDEQNWYDKGEEIEFVENENGTDGTANYVLEIELQNTDEPEGPATNSVYTIIENANDEDCETLIFHSEPEKSTSDDILIKHENSDNDIEEDQEEANISSPEKSGAPGLHKCTFCPKLYIQQNRLRSHLIIDHAQNVNETDSREELGTVEDAGNSTDGESSLNVRTSLDVHKCPLCPKLYIQPIRLRNHLVLEHNANNDYSCKVCYKWFNSEGERKNHEASHGKDHSRILKCPTCELYFGSLDELETHHNEIHFCYKCPKCSTVVDTMDALKSHTTEFHRPRAGGKSKNLNCESCNRMFSTKVALSDHQRSNCGQAPLYKCDICEKSYHSAGSLKTHKTMHSGLMPFGCKYCGKFFRTKGQVKVHERQHSGEKPYKCDACPKSFAYRESLLTHQSLHTGLKRFMCIPCGARFSCISNLQSHRKSHKLTCGQHPNFTKPIESAITEDSKMEVLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053706;
- 90% Identity
- iTF_01053706;
- 80% Identity
- -