Basic Information

Insect: Nephrotoma guestfalica
Gene Symbol: -
Assembly: GCA_963691935.1
Location: OY829914.1:275046907-275048964[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00012 0.024 16.9 1.5 1 23 237 259 237 259 0.98

2 10 0.0015 0.29 13.5 2.3 1 23 278 300 278 300 0.98

3 10 1.9 3.8e+02 3.7 4.6 1 22 324 344 324 345 0.73

4 10 0.0001 0.02 17.1 0.7 1 23 351 373 351 373 0.97

5 10 0.00014 0.028 16.7 3.0 1 23 392 414 392 414 0.99

6 10 2.7e-06 0.00053 22.1 4.2 1 23 420 442 420 442 0.97

7 10 3.9e-05 0.0077 18.4 2.4 1 23 448 470 448 470 0.98

8 10 7.3e-06 0.0014 20.7 0.3 1 23 476 498 476 498 0.98

9 10 0.00013 0.025 16.8 0.2 1 23 502 524 502 524 0.98

10 10 0.00023 0.045 16.0 0.8 1 23 533 556 533 556 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00012	0.024	16.9	1.5	1	23	237	259	237	259	0.98
2	10	0.0015	0.29	13.5	2.3	1	23	278	300	278	300	0.98
3	10	1.9	3.8e+02	3.7	4.6	1	22	324	344	324	345	0.73
4	10	0.0001	0.02	17.1	0.7	1	23	351	373	351	373	0.97
5	10	0.00014	0.028	16.7	3.0	1	23	392	414	392	414	0.99
6	10	2.7e-06	0.00053	22.1	4.2	1	23	420	442	420	442	0.97
7	10	3.9e-05	0.0077	18.4	2.4	1	23	448	470	448	470	0.98
8	10	7.3e-06	0.0014	20.7	0.3	1	23	476	498	476	498	0.98
9	10	0.00013	0.025	16.8	0.2	1	23	502	524	502	524	0.98
10	10	0.00023	0.045	16.0	0.8	1	23	533	556	533	556	0.96

Sequence Information

Coding Sequence: ATGACagattttcgtGATATCGAGGAGGAGATCCCATTGACCGCAATACCAACGgatgttatttatattaagaaCGAGTTTATCGAAGAAACAGCGGAAGAAAATGACCATGAAAACCTTGAGGTGCGGTACGAAATTTATGATCAGATAGAGGAAAATTCTTACAACTGCGAGGCGTGCAACGTAACGTTTGTGTCTATTGAAGACCATATTAGGGATTGCCATGCTGACGAGGATGTAATTGTTAAGATTCAAGGCGATGAAGACGAGGCCAATGATGCTGATGTTAATTTAGAAGagtttgttgattttgaatcgGACAAAGAAATCAAGCTGGAAACTAGGGAGGAAGATAAGTTTAGCGAAACCATGAACGAGGATCCTGATATCGATGATGAAGATATGTACGAGACAGAGTATTTGGATGATGATGAAGATACGGAGATGTATCTTAAGAATAATGATGCCGATACTTCTCAAAGCGCTACTGAACCGAATAATAAGTTACTCACTGACCCCTTGGAACTTAACGACTGTGTAGATAAGGATGGTCGTCCATTTAATCGTAAGCTGCTAAAAATTAATGTATTCTGGAACGATAAGGATGAACAATCAGGAACAATGGAAaactcaaatataaaaattgaaccgGCGAAAACACAGACAAAAAAGCAAAAGAGCGGCGTATCGCGTAAATCCAGCGCTGCATATAAGTGTGCCGAATGTGATTTAACTTTCTCTACGGCCCGTTCCTATTCGAcgcatttaaaatttcatcgcgCCGCTACGAATGGCACGGATTCTGCTGATCGCGATGAGCctcaagaaaaatttgaatgcgAAATTTGTCACACAGTATTCGCatcgaataaaagtaaacgttTACATTCACGCATGCACGATCCCGTCAAGCCACGTGTAATCGAACAATCGCATATTGCCGAAGGTTCAAGTAGCACACGCGAATATTTTCATTgtgaaatatgtaataaaagcTACGAAAAGCAGTTCGAAGTGGTGCACATGCGTATGCATAGCGATGAACCAAATTATCATTgcacaatttgtaataaaatatttaattccatgGTCAATTTGGAAATGCATGTAAATGCCCATCAAGAGTTGAAATTACCAACTCGCGCAATTGATGGGACTGGTATTGAATTGCCGTACAAGTGTTCGTTTTGTGGCCGACAATTTTCGAGGCCACATGAAAAAGTCAAACATGAAAGGATACATACTGGGGAGAAGCCGCATATATGCGAGATATGCGGAAAACGTTTTAGAGTTTCGTATTGTTTAACACTTCATATGAGAACTCACGCGGGAGCTCGTCCATACGCGTGTCCGTACTGCAATAAACGCTTTAAGGCACAATCTGTATATAATCATCATTTAATGACACATTCCGATTCTAGGCCGTACCAATGCCCGTTTTGCCCGAAAGCATTTAAAACATCGGTACAATTGGCCGGACATAAAAACAGCCACACCAAGCCGTTTAGCTGCAGTGAATGTAATCGACCGTTTGCAACATTGTACGCGGTTAGAGGACACATGGAAACGCATAAAAaaccaaatcataatttaaaacataaatgtcGAGTATGCGGTGCGACATACGCGAGAAGTTTTGCATTGCGCGATCATATAAAAGAACAGCATTCTGATATATATGATAGTGGTGAGTTTATCGATAGCGATATAACGCAGATACACGGAGCTACAgatgaaaaaatattgccaGATTCTCAAATATTTTCTCTTGTTGTAAATGATGAACTCGTCGGAGATGAGACGACGGATGGCACTATCATTGATGAATTTGAAACGGAAGAAGTTGTTACCGATTGGATTCtacctaaaaaataa
Protein Sequence: MTDFRDIEEEIPLTAIPTDVIYIKNEFIEETAEENDHENLEVRYEIYDQIEENSYNCEACNVTFVSIEDHIRDCHADEDVIVKIQGDEDEANDADVNLEEFVDFESDKEIKLETREEDKFSETMNEDPDIDDEDMYETEYLDDDEDTEMYLKNNDADTSQSATEPNNKLLTDPLELNDCVDKDGRPFNRKLLKINVFWNDKDEQSGTMENSNIKIEPAKTQTKKQKSGVSRKSSAAYKCAECDLTFSTARSYSTHLKFHRAATNGTDSADRDEPQEKFECEICHTVFASNKSKRLHSRMHDPVKPRVIEQSHIAEGSSSTREYFHCEICNKSYEKQFEVVHMRMHSDEPNYHCTICNKIFNSMVNLEMHVNAHQELKLPTRAIDGTGIELPYKCSFCGRQFSRPHEKVKHERIHTGEKPHICEICGKRFRVSYCLTLHMRTHAGARPYACPYCNKRFKAQSVYNHHLMTHSDSRPYQCPFCPKAFKTSVQLAGHKNSHTKPFSCSECNRPFATLYAVRGHMETHKKPNHNLKHKCRVCGATYARSFALRDHIKEQHSDIYDSGEFIDSDITQIHGATDEKILPDSQIFSLVVNDELVGDETTDGTIIDEFETEEVVTDWILPKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01052568; iTF_01053729;
90% Identity: iTF_01052568; iTF_01053729;
80% Identity: -