Basic Information

Insect: Nephrotoma guestfalica
Gene Symbol: -
Assembly: GCA_963691935.1
Location: OY829914.1:19665001-19670651[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.03 5.9 9.4 0.5 1 23 209 232 209 232 0.93

2 12 0.026 5.2 9.6 2.6 1 23 240 263 240 263 0.97

3 12 0.011 2.3 10.7 0.6 1 23 270 293 270 293 0.94

4 12 0.0021 0.41 13.0 2.8 1 21 299 319 299 320 0.93

5 12 0.048 9.4 8.7 2.3 1 23 512 534 512 535 0.94

6 12 0.0001 0.02 17.2 3.2 1 23 543 566 543 566 0.96

7 12 3.2e-07 6.2e-05 25.0 1.7 1 23 575 597 575 597 0.98

8 12 0.00017 0.034 16.4 1.1 1 23 603 625 603 625 0.99

9 12 0.00035 0.068 15.5 0.8 1 23 631 654 631 654 0.95

10 12 1.9e-05 0.0037 19.5 1.5 1 23 659 681 659 681 0.97

11 12 4e-05 0.0079 18.4 7.6 2 23 689 710 688 710 0.97

12 12 0.021 4.2 9.8 7.1 1 23 715 738 715 738 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.03	5.9	9.4	0.5	1	23	209	232	209	232	0.93
2	12	0.026	5.2	9.6	2.6	1	23	240	263	240	263	0.97
3	12	0.011	2.3	10.7	0.6	1	23	270	293	270	293	0.94
4	12	0.0021	0.41	13.0	2.8	1	21	299	319	299	320	0.93
5	12	0.048	9.4	8.7	2.3	1	23	512	534	512	535	0.94
6	12	0.0001	0.02	17.2	3.2	1	23	543	566	543	566	0.96
7	12	3.2e-07	6.2e-05	25.0	1.7	1	23	575	597	575	597	0.98
8	12	0.00017	0.034	16.4	1.1	1	23	603	625	603	625	0.99
9	12	0.00035	0.068	15.5	0.8	1	23	631	654	631	654	0.95
10	12	1.9e-05	0.0037	19.5	1.5	1	23	659	681	659	681	0.97
11	12	4e-05	0.0079	18.4	7.6	2	23	689	710	688	710	0.97
12	12	0.021	4.2	9.8	7.1	1	23	715	738	715	738	0.98

Sequence Information

Coding Sequence: atggatttaatttGCAGAACATGTTTGGCATATAATGATGAATTGGAACCACTATTTGCTAAGAAACTAGTGGATACAGACTATAAGGATATAACTACAATGATATATCTTTGTACTGGATTGGAGATTTCCAAAGGTGATCAATTATCTGATACAATTTGTGCGCAATGCATCGATTCGATTATAGCAGCATTTAAATATCGTAAAAAGGTTTGGGAATCAAATAATGTCCTACTTGAAGCGTCGAAAATGTTTCTGGGTACAACTGATAAAGCAACAAATtccgaaaaaaataaagtttcgtTAGTTGCCCCCTTTGAATCCAAGACTGAACCTAAACTAGAAAATTTCGATATTGAACTGTCTAATTTGGAAACACTAGAAGCCGAATTTTTGAACTTTGAACCACCTTCCCTTGAAGATGAAATTACGAATGATTCACAATCCGATCTGAAATCTAACTTTTCTGAAACTACGGGCGAACAAACGTATATTGATCTTGGGCCCGAGGATATAAACCTGAGCTTGGAGCAACTCGGCATAGAAACACCGGATtatcagaaaattttcaaagatttggacaaatatatacaaatagcCGATCGATCTACTACACTGCGACCTTACTGTTGCACAGAATGCAATCAGACGTATGAAGTGGCCGGTCCACTATATAAACATCTACTCGCGAATCATAACATACGTGCGCGTACAGTATTCCGGTGCAAGGCATGCTTAAAAACGTATAtgactgaaaaatatttaagaagccatttaaaaaattcacatcAATCGTTTGACCGCAATTTTATATGCGATTCTTGTGGCCAATCATTTAAACTTTCCAATTCTGAACTTAAATTGCATTTGCGTTCGCACACCAATGAAAGACCCTTCGTTTGCCACATATGTAATATGGGGTTTAAAAGCTCGAGCCATAGGACTGCACACTTTAAGAAGATTTCTGAAGATGATCAATTAACTGATACGATTTGTACGCAATGCATCGATTCGATTATAACCGCATTTAAGTTTCGTAGAAAAGTTTGGGAATCAAATAATGTACTACTTAAAGCATCGAAAATGTTGACGAATGCAACTGATAGTTACACAAAATCGGATGAAAATAACACTATTATATTTGTTGCTCCCCTCGAGTCAAAGATTGACCATAAACTAGAAAATTTCGATATTGATCTGTCTAATTTGGAAACACTAGAGACCGAATTTTTGAACTTTGAACCACCTTCCTTTGAAGATGGAAATGAGTATGATCCACAATCCGAACTGGAATGTGATCCACAATCCGAACTGGAATATGATCCACATTCCGAGCTGGAATGTGATCCACAATCCGAACTGCAATGTAACCTTTCTGAACTTACAGGCGAGCAAACGTATATTGAGCTTGGGCCTAATGAAAAGCATCTTAGCTTGAAAGAGCTCGGCATAGAAACACCGGATtatcagaaaattttcaaagatttggacaaatatatacaaatagcAGATAAATCTAATACTTCGCGGCCCTATTGTTGCACGAAATGCAATCAGACGTATGAAGTAGCTGGTCCACTGTACAAACATCTACTCGCGCATCATAATATACGTGTCCTTACAGCATTTCGTTGCAAGATCTGTTCAAAAACGTTTATCCAAGAAAAGCATataagaaaacatttaaataatgcaCATCAACCCAAatcatttaaccaaaattttgtctGCGATTTATGTGGTCAATCATTTAAACATAAATCTAACTTAATCGAACACCTAAACAGGCACAACGGAATTAAGCCATTTCAGTGTGATCTTTGTCAGTTTCGTACTGTATCTAATTCCGAACTTAAATTGCATTTGCGATCACACACCAATGAAAGGCCATTCATTTGCAGCATATGTAACATGGGCTTTAGAAGCTCAAGTCACAGATCTGCGCATATTAAAGAAGCACATTCAGATAATCCCCATGAGTGCAAAATATGTGGAACCGAGTTTACATCGTGGCGGGTTTATCAACGGCATATGCAGCTTCATAACtcaaataatattaatcttAAATGTGACATAtgccataaaaaattcaatcgtAAGAGGTATTTAAAGTTGCATATGAGACACCATGGAGAGAAAATGTTTAAGTGTTCTGTGTGTGAGAAAGATTTTCATCAGAAGCAAAACTGCAAGAACCACATGAAAAAAGCTCATAAATCtgtattgtaa
Protein Sequence: MDLICRTCLAYNDELEPLFAKKLVDTDYKDITTMIYLCTGLEISKGDQLSDTICAQCIDSIIAAFKYRKKVWESNNVLLEASKMFLGTTDKATNSEKNKVSLVAPFESKTEPKLENFDIELSNLETLEAEFLNFEPPSLEDEITNDSQSDLKSNFSETTGEQTYIDLGPEDINLSLEQLGIETPDYQKIFKDLDKYIQIADRSTTLRPYCCTECNQTYEVAGPLYKHLLANHNIRARTVFRCKACLKTYMTEKYLRSHLKNSHQSFDRNFICDSCGQSFKLSNSELKLHLRSHTNERPFVCHICNMGFKSSSHRTAHFKKISEDDQLTDTICTQCIDSIITAFKFRRKVWESNNVLLKASKMLTNATDSYTKSDENNTIIFVAPLESKIDHKLENFDIDLSNLETLETEFLNFEPPSFEDGNEYDPQSELECDPQSELEYDPHSELECDPQSELQCNLSELTGEQTYIELGPNEKHLSLKELGIETPDYQKIFKDLDKYIQIADKSNTSRPYCCTKCNQTYEVAGPLYKHLLAHHNIRVLTAFRCKICSKTFIQEKHIRKHLNNAHQPKSFNQNFVCDLCGQSFKHKSNLIEHLNRHNGIKPFQCDLCQFRTVSNSELKLHLRSHTNERPFICSICNMGFRSSSHRSAHIKEAHSDNPHECKICGTEFTSWRVYQRHMQLHNSNNINLKCDICHKKFNRKRYLKLHMRHHGEKMFKCSVCEKDFHQKQNCKNHMKKAHKSVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -