Ngue055405.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- grau
- Assembly
- GCA_963691935.1
- Location
- OY829915.1:193484704-193496413[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4e-06 0.00028 23.0 0.8 3 23 131 152 130 152 0.97 2 19 0.096 19 7.8 0.5 1 20 199 218 199 221 0.91 3 19 2.3 4.5e+02 3.5 0.4 3 23 332 353 330 353 0.94 4 19 0.00022 0.043 16.1 3.0 1 21 385 405 385 407 0.95 5 19 0.0001 0.021 17.1 2.4 1 23 415 438 415 438 0.98 6 19 5.7 1.1e+03 2.2 0.3 5 14 448 457 447 467 0.81 7 19 0.00014 0.028 16.7 0.8 2 23 474 496 473 496 0.96 8 19 0.46 90 5.7 0.6 2 23 505 527 504 527 0.93 9 19 0.0052 1 11.8 0.3 1 21 534 554 534 555 0.95 10 19 0.96 1.9e+02 4.6 0.7 2 23 713 735 712 735 0.96 11 19 4.6 9.1e+02 2.5 4.0 6 23 744 761 744 761 0.98 12 19 0.0011 0.21 13.9 3.4 1 23 767 789 767 789 0.98 13 19 0.0002 0.04 16.2 1.3 1 23 797 819 797 819 0.98 14 19 0.0014 0.27 13.6 1.1 1 23 827 850 827 850 0.92 15 19 0.00089 0.17 14.2 2.5 1 23 856 879 856 879 0.96 16 19 0.12 23 7.5 1.2 2 23 888 909 887 909 0.96 17 19 0.0055 1.1 11.7 0.6 1 23 916 939 916 939 0.96 18 19 1.2e-05 0.0023 20.1 0.9 1 23 945 967 945 967 0.98 19 19 3.9e-06 0.00076 21.6 4.1 1 23 973 996 973 996 0.97
Sequence Information
- Coding Sequence
- ATGTTCATTATTCGAacgGACCAAAATATTATTGGTAATTTCATTTGTACACGTTGTTGGTATATAATCGAGAGTTTCCACAAATTTTATGAAGAAACTTTAGAGGTCCATAAAACATTTCTTTCCAAAACCCTCGAGGTTGAGTTAAATTGTGAAAATCGAGAGAATTTTACTgtggaaattaaattagaaaacaatGAAATTAGCCCAGAAACcgaattaaaatcagaaaataaaagcaatttcCACATAAATGGTGACGTAAAACTACAATTAGAAAACCAAGGAATTAATAGGTCCACGGACGATGAATGTGAAACTAGGTCGGTCGTCcataaagcaaaatttattatatcggATAAGGAAAAATCCGTTCCATCCGATTCTTTCTGTGACTATTGTGGAAAAGGATTTTCAACACCTTCTTCATTGAAATTGCATAAGCGACGAGTACACGAAGGTGTTAAAAAATCGTGCGAAATTTGTGCCAAAGCGGTTAAACATATGGGAGCCCATAAAAGATATGCTCATTATGATGAACCTACAATACAAAGCAAACATAAATACAAACATTCCTCTCGATCTGAACGCATTCATCAATGTATCGTGTGCAAGAAAACTTTTAGAAGAGGGATTGACCTCAGGGAACATTTGCCAGCACATCCCGACATGGTTCTAAACCGAGAAAATTGCTCTTTGAATGGTTTAAAAGTAGAACCAGAAAGTCACGGgataaaaacagaaaatccaTTGGGATTCGAAGTTGATAGAATAACTGAAACTATCGACAAAAATAACACCAATGAAGGAAAACTAGATGACTATGCAGTTCAAAATACAGATGAAATTGCTACCGAAGAAGTCATCAATACTAAAAAGCGAGAAAAAGCGACGCGGTTAAAATATGGAAATGCTAAACAAGATAAAACTGAAGAGTACTTAGCTAAAATCGCGAATGAAGATGACGAAATTCGAAAGTACTATAATATGGATTGTGAACTTTGTGATATTAAGTTCCTTAAATTTGCAGATGCAAGGACTCATTACCGAACGAACCATTCGATaaaaggatatctcagttgttGTGGCAAAAAATTTCTTAGACGTTGCTATGCATTAGAACATCTTCATTGGCACCTTAACACAGATAAGTTTACGTGCAAGGATTGTAATAAAGTTTTTTCCGCTAGTAAAAACTTGCTGATTCACCAACAATGTCATCTGCCGGTTGACATGAAACCATTCAAATGCACAAAATGCCCACAAGCATTTATCAAATTGTATCTTTTGCGCCAGCATCAAAAGAAACGTCATACTACAgaggaaaaaacatttttctgtgATTGTGGAAAGGCatttgccacaaaaaatatactaaaatttcataaacaagGAGTACATGAAGGCGCTTTTACACAAGTTTGCGAAATATGTGCCAAAACGTTTAAAAGTCTATCGTTCTATCAAaatcatatgaaaaatattcACAGTACTGTGGAAAAACCCAGAGTGCAATGTTCCTTGTGCAGTGCATGGCTAAAACATGAAGATAGTTTACGTAAGCATATTATGGTGCAACACAACGATGTAAAAAATACGTACATATGTAATATATGTAACAAGAAAGCGCCGAATCGGGGTGCATTGAGAAGCCACCATAAGAACATTTAcagtaattatatttgttcAATATGCTGGgacattgttgaaaatttccataaattgtATGAAGAGACGTTGGAAACCCATAATTTgttatattccaaaatttcagaAGATGGTGTACATTCGGAAAACCTAGATATTTTGGCTTTAAATGATGTAGAAgtaaaatctgaaaattttattttaaaccatgATAAAGTTAAGTTAGAAGACCAAGAAACGTTTATACTGTCTTTCGAAGATATTACAGCAAATTCCGTGATAAATGATAAGTCGGTTGACGATGAAAGTTTAAATGACAATTTAATAATTCCTAATGGTATCGAATGTGATTCTGAGGAAAACACCAAAACTGGAACGAAGCAAAAATCGAAACGATTGcatattaagaaaattagaaaagagAAAAATGTCGTTGACATGGCCAAAATCGAAAATGAAGACGATGAAATTCGGAAATACTACAGTATGGAATGTGAACTTTGCAGTAGTaagttcaataaatttcaagatGCAAAAACTCACTATCGCGTAATTCACTCGCTAAATGGATATCTTAGTTGTTGTGGTAAAAAATTCCGTAAGCGGTGTTATGTATTAGAACATCTTCATCGGCATCTAAACCCTGATGAATTTATgtgtaaaatttgtaatagaatTTATGCCGATAAACGGGGCTTACATATTCACCAACACACTCACTTACCGATGAATATGAAACCATTCAAATGCCCTAAATGTCCACAAACATTTGCAAAAATGTTCTTGTTGCGTCAACATCAAGTAAAACATGTTACTGATGACGAAAAAATTTTTATCTGTGACGAGTGTGGAAAAGCatTTGCCACAAAATGTTTATTGCAATTTCATAAGCGAGGAGCTCACGAAGGCGCTTTTACGCACGTTTGCGAAATATGTGCAAAATCGTTCAAGAGTAAACTTTTCTATCAAAACCATATGAAAAATATTCACAGTGCATCAAATAAGCCACCGGTGCAGTGCACGTTATGCAACGCGTGGCTAAAACATGAATACAGTTTACGCAAGCATATGGCCAGGCATGAGGattcaaaaaaaacttacatttgtCAAATATGTAATAAGCAAGCCCCAAATCGGGGCGCGTTGAAAAGCCATCATAATTATGTACATGCGAGTGAACGAAGTCACAAGTGTAATGTATGCAATAAAGCATTTAAAAAGGCGGTTGCACTCAAGGAGCACTTGGCCACACATACGGGTGAAATTTTGTATTCGTGTCCCCATTGCCCGAAAACATTTAATTCATCAGCCAATCTGCATTCACATCGGAAAAAGGTGCATACAAAAGAATGGGAGGAAAATCGACGAAACAGGACGATTACAATAAAAGTATAG
- Protein Sequence
- MFIIRTDQNIIGNFICTRCWYIIESFHKFYEETLEVHKTFLSKTLEVELNCENRENFTVEIKLENNEISPETELKSENKSNFHINGDVKLQLENQGINRSTDDECETRSVVHKAKFIISDKEKSVPSDSFCDYCGKGFSTPSSLKLHKRRVHEGVKKSCEICAKAVKHMGAHKRYAHYDEPTIQSKHKYKHSSRSERIHQCIVCKKTFRRGIDLREHLPAHPDMVLNRENCSLNGLKVEPESHGIKTENPLGFEVDRITETIDKNNTNEGKLDDYAVQNTDEIATEEVINTKKREKATRLKYGNAKQDKTEEYLAKIANEDDEIRKYYNMDCELCDIKFLKFADARTHYRTNHSIKGYLSCCGKKFLRRCYALEHLHWHLNTDKFTCKDCNKVFSASKNLLIHQQCHLPVDMKPFKCTKCPQAFIKLYLLRQHQKKRHTTEEKTFFCDCGKAFATKNILKFHKQGVHEGAFTQVCEICAKTFKSLSFYQNHMKNIHSTVEKPRVQCSLCSAWLKHEDSLRKHIMVQHNDVKNTYICNICNKKAPNRGALRSHHKNIYSNYICSICWDIVENFHKLYEETLETHNLLYSKISEDGVHSENLDILALNDVEVKSENFILNHDKVKLEDQETFILSFEDITANSVINDKSVDDESLNDNLIIPNGIECDSEENTKTGTKQKSKRLHIKKIRKEKNVVDMAKIENEDDEIRKYYSMECELCSSKFNKFQDAKTHYRVIHSLNGYLSCCGKKFRKRCYVLEHLHRHLNPDEFMCKICNRIYADKRGLHIHQHTHLPMNMKPFKCPKCPQTFAKMFLLRQHQVKHVTDDEKIFICDECGKAFATKCLLQFHKRGAHEGAFTHVCEICAKSFKSKLFYQNHMKNIHSASNKPPVQCTLCNAWLKHEYSLRKHMARHEDSKKTYICQICNKQAPNRGALKSHHNYVHASERSHKCNVCNKAFKKAVALKEHLATHTGEILYSCPHCPKTFNSSANLHSHRKKVHTKEWEENRRNRTITIKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -