Ngue021384.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829914.1:13399154-13400986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0051 1 11.8 2.6 1 23 234 256 234 256 0.98 2 11 0.00019 0.037 16.3 0.7 1 21 262 282 262 283 0.95 3 11 1e-06 0.0002 23.4 1.4 1 23 290 312 290 312 0.96 4 11 0.0092 1.8 11.0 5.5 2 19 319 336 318 341 0.91 5 11 8.1e-06 0.0016 20.6 0.3 2 23 345 367 345 367 0.96 6 11 0.0025 0.49 12.8 0.2 2 23 389 411 388 411 0.94 7 11 0.84 1.6e+02 4.8 6.3 1 23 417 439 417 439 0.95 8 11 0.00026 0.051 15.8 0.7 1 23 455 477 455 477 0.95 9 11 0.00013 0.026 16.8 1.6 1 23 483 506 483 506 0.96 10 11 4.7e-06 0.00093 21.3 0.2 3 23 516 536 514 536 0.97 11 11 0.004 0.79 12.1 2.4 1 23 542 565 542 565 0.97
Sequence Information
- Coding Sequence
- ATGAGTCTACACGAGGATGAGACCTTAGAGTTTGGAACTAGTGAAGACATTTTGTACAGTCCAATTCCAGAATATTTGGACGACCCAAACGAGCAAATTGAAGATGATCTTGGATTTCTTAGTTCTCCGATTAGTacgacaaataaaataaatcgtttggTAGAAATGCTACAATACTATAAGAACCAAATAAGTTTCCTCGAGGATGCAATTAGAAAGCACGAGATGAATGAATCGTTAAGCACGAAGATTGATTCATTCCCAAACTTGAGCTTGATTGCGAaagaatttggtaaattttttttgggcgAGTCAGAAGAATGGCCCTGTATAAAATGTATGGAAACTATAAAAGTTGCTATTAACTCAAAGGAAATTCCAAAGCCATTTGCtataattaatttggaaataaacCATATTGATGAGCCATTATCAGACTTGGAATTAGATAACACAAATTCCGCCGCTAATTGGGAAATAAACTATATTGATGAGCCATTACCAAACTTCGGATTACATCATACAAATTTTGCTACTGTTGATAATCAATTGAAGAATGAAGCAGATGACTTCAAGGCGGAGGACAGTTCGAACGATTTAAACTCAGTTAGTACGAACATGGAGAATGAGATAGAAAGATTAAATGAACTAGACCTGGCATTATTAGAAGCAAAATTCTCTACCGCAGATTTAGGAAAGTACCATTGCGAAATATGCAAGGCAACAACTAACTcttaccaaaaattaatttcacatttAAGACGTCATCGAGGTGCACATATATACGAATGTGAAAGATGTGGTAAAGGATTTACTCACGGACACAATTACAAAGATCATATCCTTGTTTATCAAGATGCCAGACCTCATATATGCGGAGTTTGCGGGAAAGGGTTTAAAACTCCAAAATACCTGAAACGACACCAGTTAAGCCACTTAACCGAAAGAATTGTACCTTGTCCGCATTGTGATAGAATGTTTTGCCATCAAAAGGGATTACAGGAACACTGTTTACAGTTACACATTGAACGAACATGTCCTGAttgtaatgaaatatttaaaaatagtgtACTTTTAAGAAGACATCTCTCTAGGGTTCACAACAAAAGTAAGATAAGCCGGGCCAAGTTTCATAACGGAGAGAGTGGACCTTCGGAAAGGTTACCTTGTGGGCAATGTGAAAAGACGTTTTTGACCAAAGCTAATTTAATActacactataaaaatattcataaaaaagaaagaaaacatTCATGTCCGTGTTGCAGCAAATCATTTTTTACTACTCAAGTTTTACGAAGCCACATGCAATTTCATATAAATGAGAAAGAAAGCAACGAAGCAATCGAAAAATATGCGAGATATAAATGTGACGAGTGTGATAGAACGTTTTCAGTTCTAGGCTTGTATAGGGAACATAAAACACTTCATTCCGGAGTGAAAGAGCACAGTTGCGAATTTTGTGGAAAAGcatttgcatttaaaatttatctatcAAAACATGTTCGTTTAATGCACAATACTGCTGATCCAAAGAATTCCATATGTAGTTACTGTGGTAAAGTTTCGGCAAATAAGGCAGCCCTTAAGTCACACATGCTAACACATACTGGGGAAACACCATTTTCTTGTACAATGTGTGCTTCTAAATTTCGATATGCAAAATCTCTTCGACTGCATAtgaaaaacaaacataattctgaaaatatttag
- Protein Sequence
- MSLHEDETLEFGTSEDILYSPIPEYLDDPNEQIEDDLGFLSSPISTTNKINRLVEMLQYYKNQISFLEDAIRKHEMNESLSTKIDSFPNLSLIAKEFGKFFLGESEEWPCIKCMETIKVAINSKEIPKPFAIINLEINHIDEPLSDLELDNTNSAANWEINYIDEPLPNFGLHHTNFATVDNQLKNEADDFKAEDSSNDLNSVSTNMENEIERLNELDLALLEAKFSTADLGKYHCEICKATTNSYQKLISHLRRHRGAHIYECERCGKGFTHGHNYKDHILVYQDARPHICGVCGKGFKTPKYLKRHQLSHLTERIVPCPHCDRMFCHQKGLQEHCLQLHIERTCPDCNEIFKNSVLLRRHLSRVHNKSKISRAKFHNGESGPSERLPCGQCEKTFLTKANLILHYKNIHKKERKHSCPCCSKSFFTTQVLRSHMQFHINEKESNEAIEKYARYKCDECDRTFSVLGLYREHKTLHSGVKEHSCEFCGKAFAFKIYLSKHVRLMHNTADPKNSICSYCGKVSANKAALKSHMLTHTGETPFSCTMCASKFRYAKSLRLHMKNKHNSENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01052527;
- 90% Identity
- -
- 80% Identity
- -