Ngue054810.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829915.1:184871659-184884251[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.51 1e+02 5.5 0.6 6 23 236 253 236 253 0.97 2 14 1.9e-05 0.0038 19.4 0.3 2 23 260 282 260 282 0.96 3 14 0.00024 0.047 16.0 0.6 1 23 320 342 320 342 0.96 4 14 0.00044 0.087 15.1 1.9 1 23 347 369 347 369 0.98 5 14 0.0056 1.1 11.7 1.7 1 21 375 395 375 396 0.95 6 14 0.033 6.6 9.2 1.2 2 23 556 578 555 578 0.97 7 14 1.6e-06 0.00032 22.8 2.7 2 23 611 632 610 632 0.97 8 14 4.4e-05 0.0087 18.3 1.6 1 23 640 662 640 662 0.99 9 14 1e-05 0.002 20.3 2.1 1 23 668 691 668 691 0.97 10 14 0.002 0.39 13.1 1.4 1 23 697 720 697 720 0.94 11 14 0.011 2.2 10.7 0.8 2 23 729 750 728 750 0.97 12 14 9.2e-06 0.0018 20.4 0.2 1 23 757 780 757 780 0.97 13 14 4.3e-06 0.00084 21.5 0.9 1 23 785 807 785 807 0.97 14 14 7.4e-05 0.014 17.6 2.4 1 23 813 836 813 836 0.97
Sequence Information
- Coding Sequence
- ATGAATAATCAGCAGTTATCACAATGTCGCCTCTGTTTATTACGATCACCAAAcctcatcaatatttttatagaaaaatttcacGATAAAACAATTGCGTTTATACTAACTAAACATTTTTGGCTTGAAGTGATGGAAGGCTCAAATGAAGATATTTGTCAAGATTGTTGGATAAAAGTTAAAGATTTTCACTTATTTTACACAAATGTTTATAATATCCACATGGAGTTAATTAACACTGTGGAGAAtgatattaaaaaagaaatagacGAAATACCGAGTACGATCAAAGTCAAAAAAGAATCTGATGACGAATTAATTCTACGGCCGGATTTAAAGCCttcggaaaatatttatgataacaAGTCGCCGCCGAATGATAATAATGGGACGACGAACGATTACAGTCGTGGCAATGGAAGCAACAGTGATGCATATTTCATTCCGCCGCCATTAGTACAACGAGATTCAAACCTAGTTTCTTTGACCAAAAAACCGGAACTACTCACGGTTAGCAAAACGAAAACAGCCAAAGAAAGAAAAGGAATTGATGCTGTTGGACAAgcaaaaatttacaaagaaaatgaGCAGATAGCGGAGAATTTTTCGTTGGTCTGTGAAATCTGTTCGCTTCAATTGGATTCCTTTCGAGATTTGCAATTCCATTATATGAAGCAACACAACGTTCAGGGCTATGTACGATGCTGCAATAAGAAATTTGTGAAGCGTTTCTTCTTGCTTGCACACTTAGAATATCATTTAAATCCCGACTCTGCCAGATGTGTAATATGTAACAAAGCTTTTTCAGACAAAGTTTGGTTGCAAATACATTTGCGTAATAATCATATACGTGACATGTCTATGCGCGAAAACGGTGTTGATCCCAGAACTCAATGGATAAAAACGAAACACTTCAAAACACCCACGGAAATAGCAGGGCCGGCTAACAGTATAAAATTTCCTTGTGGcttttgtggaaaatttactCGAAATGCTCGAGCCCTTCGAACCCACATGTATTTACATACCGGAGAAAtgtttaaatgcaatttttgtgCAAAAACTTTCAAAAAGCTGATAAGTTTAACGGAACATTACGCAACACACACCGGAGACCAGTTGTACTCGTGTCTTTATTGTCCAAGAACTTGTAATTCATCATCCAATATGTATACACATgtaAAGGAAGACGAATTAAACGAATATATTTGTCATGATTGTTGGATAAAAGTCAacgaatttcatttattttacacTAAAGTTTATAATATCCACTTTCTTGGCCTACCTACGAAAGTTATTAAAGTGGAGGTAGATGACGACTTCTCACTAGTAAATAAGGAAAATCAAGATTTGGGCAgagatttgcaaattaaatctGAAGGCAGCCTAGATGTAAACACAAATCAACAGGGCGATGACCAAAATACATGTCCATCGTTAGACCTTTGTGATGATGAGATTTCTAATGATTTAGAAGATAGAGATGATGAAAGTACAAAAGAGTCTAGTGTAACCACACCATcgcaaaaacttaaaaatgctgTAGTAAAAACACGAAAAACCAAAGCAGTAAAAATAGTTCGAGAGAAAAAAGAAATTGATCCGATGAAACAGGAAAAATTTAACACAGAGAATACTCAGATATCAGAGTATTATTCGATGACCTGTGAACTCTGTTCATTGAAATTGGACTCGCTTCGTAATTTACAATACCACTATAGAACAAAACACAAGATAAAAGGATATGTGCGATGTTGCAATCGTAAGTTTATCAAGCGCGCTGCCATTCTTGAACATCTGGTGCGTCATTTAAAcccacaaacaattaaatgtgaAATTTGTGATAAAACTTTCGTCCGTAAATATTGTTTACAACTGCATTTACGAAGTCATTTGCCGGCAGGAGAACGCCCTTACAAATGCGCCAAATGTCCTAAGACCTATGTTATTGCCCATCTATTGAAGCGACATTTACAAACGCACACAACCGAGCGTAGCTTCGTTTGCGGTGAATGTGGTAAAGCATGTGTAACAGAATATCATCTGAAAGATCACCAGCGGAGTATGCATAGTGAAGCCAGTACTCATATTTGTGATGTGTGCGCTAAGCCATTTCGTAGTAAAGATATGTTCGTGAAACATCATGAAATTGTACATGGAAAAGTTCCGCTTCCGAAAGTACAATGCAATATATGCGGTTCTTGGGTAAAACATAAATACTTACTCAAAAGGCATATAGCTCGACATTCTGAGAGtaacaaacatttttcttgtaaCATTTGTGGAAAATCTTCTCCTAGTTCTAATGCTCTTCGAAGTCATATACGTTACGTGCATACCGACAAACTATATCAATGTGAAATTTGTGAAAAGGCTTTCAAAAAATCCACCAGTTTAAAGGAACATATGGCGTTTCACACAGGAGCTAGTTTATATTCGTGCACTTACTGCTCAAGGACGTTTAATTCATCGGCCAATATGTATGCACATAGAAAGAGAATGCATAATAAAGAATGGGAAAAAGGGAAATTAGAAAAACTTATAggtacataa
- Protein Sequence
- MNNQQLSQCRLCLLRSPNLINIFIEKFHDKTIAFILTKHFWLEVMEGSNEDICQDCWIKVKDFHLFYTNVYNIHMELINTVENDIKKEIDEIPSTIKVKKESDDELILRPDLKPSENIYDNKSPPNDNNGTTNDYSRGNGSNSDAYFIPPPLVQRDSNLVSLTKKPELLTVSKTKTAKERKGIDAVGQAKIYKENEQIAENFSLVCEICSLQLDSFRDLQFHYMKQHNVQGYVRCCNKKFVKRFFLLAHLEYHLNPDSARCVICNKAFSDKVWLQIHLRNNHIRDMSMRENGVDPRTQWIKTKHFKTPTEIAGPANSIKFPCGFCGKFTRNARALRTHMYLHTGEMFKCNFCAKTFKKLISLTEHYATHTGDQLYSCLYCPRTCNSSSNMYTHVKEDELNEYICHDCWIKVNEFHLFYTKVYNIHFLGLPTKVIKVEVDDDFSLVNKENQDLGRDLQIKSEGSLDVNTNQQGDDQNTCPSLDLCDDEISNDLEDRDDESTKESSVTTPSQKLKNAVVKTRKTKAVKIVREKKEIDPMKQEKFNTENTQISEYYSMTCELCSLKLDSLRNLQYHYRTKHKIKGYVRCCNRKFIKRAAILEHLVRHLNPQTIKCEICDKTFVRKYCLQLHLRSHLPAGERPYKCAKCPKTYVIAHLLKRHLQTHTTERSFVCGECGKACVTEYHLKDHQRSMHSEASTHICDVCAKPFRSKDMFVKHHEIVHGKVPLPKVQCNICGSWVKHKYLLKRHIARHSESNKHFSCNICGKSSPSSNALRSHIRYVHTDKLYQCEICEKAFKKSTSLKEHMAFHTGASLYSCTYCSRTFNSSANMYAHRKRMHNKEWEKGKLEKLIGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -