Ngue019239.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829913.1:282615615-282620833[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.13 25 7.4 0.1 3 20 39 56 38 57 0.95 2 30 0.66 1.3e+02 5.1 1.2 2 23 101 123 100 123 0.85 3 30 6.4 1.2e+03 2.1 2.3 1 21 158 178 158 179 0.88 4 30 0.22 43 6.6 0.8 2 20 192 210 191 212 0.89 5 30 0.21 41 6.7 1.7 1 23 223 245 223 245 0.97 6 30 0.0001 0.02 17.1 0.2 1 23 251 273 251 273 0.98 7 30 0.0001 0.02 17.1 1.6 1 23 279 301 279 301 0.98 8 30 0.064 13 8.3 0.4 1 23 354 377 354 377 0.92 9 30 0.11 22 7.6 5.8 1 23 383 405 383 405 0.96 10 30 0.019 3.8 10.0 6.9 1 23 441 464 441 464 0.95 11 30 0.0001 0.021 17.1 1.5 1 23 470 492 470 492 0.97 12 30 0.0014 0.28 13.5 1.3 1 23 558 580 558 580 0.93 13 30 0.022 4.4 9.8 4.5 1 23 645 667 645 667 0.95 14 30 0.68 1.3e+02 5.1 2.6 2 23 753 775 752 775 0.96 15 30 0.00043 0.084 15.2 1.1 1 23 781 803 781 803 0.96 16 30 0.014 2.8 10.4 3.0 2 23 893 915 892 915 0.97 17 30 0.017 3.3 10.2 1.5 1 20 921 940 921 943 0.94 18 30 0.00051 0.1 14.9 2.0 1 23 978 1000 978 1000 0.97 19 30 0.048 9.4 8.7 4.2 2 23 1027 1049 1026 1049 0.96 20 30 0.2 40 6.8 5.5 1 23 1055 1078 1055 1078 0.92 21 30 0.02 4 9.9 3.3 2 23 1139 1161 1138 1161 0.96 22 30 0.0007 0.14 14.5 1.2 1 23 1167 1189 1167 1189 0.94 23 30 0.00083 0.16 14.3 0.1 2 23 1283 1304 1282 1304 0.95 24 30 0.027 5.2 9.5 3.5 2 23 1337 1359 1336 1359 0.96 25 30 0.0014 0.27 13.6 0.7 1 20 1365 1384 1365 1387 0.94 26 30 0.073 14 8.1 5.8 1 23 1458 1481 1458 1481 0.97 27 30 0.0015 0.3 13.5 2.9 1 23 1487 1509 1487 1509 0.97 28 30 0.049 9.7 8.7 4.3 1 23 1554 1577 1554 1577 0.98 29 30 0.016 3.2 10.2 4.3 1 23 1583 1605 1583 1605 0.96 30 30 0.014 2.8 10.4 2.4 1 23 1631 1654 1631 1654 0.98
Sequence Information
- Coding Sequence
- ATGGTAAACGACTCTGATGAAGACGAACTAGTTGTAGGCCATGTAATCGATGATTGGGACAcaatgaataaaacaatttgcacAGAAGATCAAATAATCGAAGTGAAACATGGCTGCGGCACCTGTGAGCAAACCTTTCCTAGACTGGAGGACCTCAATGAGCATAAGTTATTTTGTCCGGTAAACTATGATATACCTCAGGAAGCTTTACAACCTGAAGAACCTCAGTTGCCAAAGAAGAAAACCCGGTTATGTTTCTGTTGTGAAGAAGATGTCATGGATGCTCACAAAGGGACTATTCAGTGTACAAAatgcgatttaaaattttataccaaTTTTGGCCGAGATCGACATACATACTTGCTTCACGCGGAAGATACGGAATATCAGTGCAATTCGTGTAATGCTGTGTGTCGCAACATACGCATATTCGATTTGCATATGCTTGCACAACATGCCCCCATCAGACCGTTTACTTGCGATTTTTGCCGTCGGAGCTTCTTGCTCAAATGTAGTTTAGCAATGCATTTAAAGCAACCTTTGTGCTCTGGACCTAATAATGAAAAAGCGTTATCTTGTACTGAATGCAAACAGAAATTTACTACTTTAGATGATATATATGAGCATACACATAATGGTGTGGGCAGTCCTtccaagaaatttaattttcaatgttcATACTGTGACAAATGGTTTTGTGCATTGCCACTTTTAAGCATGCACAGTCGTTCGCATAAGGACGTAAAAATGTTTCCATGCGAGGAATGCGACAAGTCGTATGGTAACATTGGTTTACTTCGAAAGCATCGTCAAATTCATGCCGTTCAAGGGTCTTACAGTTGTCCGTATTGCGATAAATTCTTCGTGTTTAAGCAACAACAATTGCGACACATTAGAGGCCATAAGTTAAGCACAGTAACTAGAAAGTCACGTCGCCGCATTCGTCCCAGAGGAAGGCCTCGCAAATCAAGCAAGATACGACAAGTCAAAATGCACAAAGATGACATGATTGAAGACGTCGTGAACCGGAAACGCGAAATATTAATCGGTAAAGAACCTTATAAATGTCCATTTTGCGAggaaacatttaattatacaCAAGAAAGAGTTCAACACGTCATAAGCATCCATGCAGACGACTGGCCACATAAATGCGAAACATGTAATGAATGTTTTGTTCGAGCCGACGACCATAAAGCGCACATGTTTCAACATATTAATAACCCCGTGGTTTTAGAAACTTTACCGTTACAAAACGAAGAAGTGGAATCGAAATCGATTTTAAGTTCCCATCATCCTATTCCTGCGGACGGAAACGCTTATAAATGTGGACATTGCGATAAAACGTTTAAATTCTCGCAGCAAAGATTACGACATACGTATAAATTCCACAAGGACGAACACTTGCAtacttgtaaaatttgtaacaaaacctATATGCGAGCTGAGACGTTAGAAATACACATGACGCTTCATAGTAGCCAGCACCTGAATTTAGATGCTTTACCGTTTcgaaaaaaaacggaaataaaGGAAGAACCCCCACTGACTATTGAGCCAGAGAACCAATTTGATTCCGGCGAAAGACCTTACAAATGTGAGGAAAAACCCTCTACTTTCACACAGAAAAGAATACGACACGTGATGATCCATCACACTAATGAACGGTCGCATAAATGTGATATTTGTGATGAAAGCTTTATGAAAGCCGAGGAGCTCAATGCGCATAAGGTCCACCATACTGATGAAACCTTAATTATAGATTCTTGGAAACTACAAAGGAATGATGAAATAACCGCAACTACAGAGAAAAAATGGCGACACCTTAAGTTTAGCCATACGAATCAGGAAATAACTGTTGATGAACTCAACACACAGGAGAATCCCCATATTGTTGACAAGGAGAGTATTATTCACTCAGATCAAACATCGCATAACTGCCTGTTTTGTGGCAATTGCTATACACAGGAAGAAGAATTAAGGGCGCACATGATTCACCACTTTGGTGGTACCGTGAGTATCAATAATGAAATAAAGTGCCGGCAACGAAGATTACAACATGTTAAAACCAGCCACACAGATCAGGAGCGGGATATAAATCATCATATTGGGGACGACATAACTTTAGATGCTAACACATTCCAGCTAGAAGATGAACGGttgtcaaaattcgaaatttctaaaaatatagaTCAAAACCGCCAAAAGACTAACAGAAAAGGGAAATTATTACATCGAAATAACTGTAGTCCAAACAAGTGCCGATTTTGCGAAAGCTCATTCAAGTACAGGACACAAAGATGGCGACATGTAAAAATTAGCCATCCCGATCAATGGCCGCACAAATGCGAAATATGTGGCACAATCTATTCCCGGGCTGGTCAGCGTAAAAAGCACATGGTGCAACATTTTGAGACCGTTGAAGTAGTTGATCCGTTACAAATCGAGGGGGCGACGATACCGGAATTTAAAGTCACTATTAAATTGCATCACAATATTCCTACTGATAAGGGCTctacaaatgaaaatgaaaaacattgcCGAAATTTAGATAGTAGAGGTATCGAAATCTTAAAATCTCCTTGGAAGGAGCGACCATACAAAGAGCTCAAACCACCTAAGGCCCAGTGTATAGATTCTAACAAGTTACGAAAAAAGATGAATCTGAAGCCTAATAAATGTGAATTTTGCGAAAAGTCATTCAAATTTAGGGAACAAAGATCACGTCATGTTAAAATGAGCCACTCGGATAAATATCCTCATACATGTGATGTATGCGATGCCAGCTTTTTCAAGGCCCGCGAGCTTGAGGAACACATGATCTGCCATGTTACTGATGGAATAATTGTAAATGCTGATACATTACAAAACGAAAGTGAGATTACGGCACGGTATAGTCCACTACATATGACTCATACAATCAAAGAGTATCACAAATGCGTATTTTGTGGCAAAAAATTTCCCCAGACCGATGAACTTGATGCACACATGATTCATCATATTGGTGCTACCGCGACTATCGAATCTACTGAATTACAGAAAGAGCATGTAGCTAAATCTACTGAACAACAATTACTGAAATGCCGATTTTGCGAAAAATCATTCAAGTTTAGGCAACAAAGGTTGCGACACGTTAAAACCAATCACCCCAACCAACGGCCACATCATTGCAAAATATGTTTCGCAAGCTTTTTCCGGGCGAGTGGGGTTAAAAGACACATGGTTCATCGTCATggtaatgatgtaattttacaaGCTTTTGCTATTCGAAACGAAGATGATATCGAATCACGGGAATATAATGACACCGAGATTTCTAGTGATGTGACGGTACAATATCAGAACCCAATAAAATCAGATTGCACAATGAATGGAGATTCATACAGCCCACTTCGTAGCAAAGAAATGCCTAATAAATGCCGTTATTGTGAAAAGTCTTTTAAGTTTAGGCAACAAAGATTGCGACATGTTAAAATTAGTCATTCGAATCAATGGTCGTATAAGTGTGAAGTATGCCACGCAAGCTTTTTTCGGTTAAGTGCGCTAACCGCGCACAAGGTCCAACATGCTGGTAATGAAGTAATTTCAAATgctattaattttcaataccaACAGACGATTAAATCACATCGGGACACTAAAACTGATGAATGCCTTAGAAATGAAACAAGTTtatgtaataaagaaaatagaaaCGAGATTATTTATGCTGACACGTTACAAGAAGTGGTCGAAACACCAACGGAATCTGAAATGAGTGATAAGTCTTTTAGATCACTTGATATCAGTGATGTGCCTTACAAAAAccggaatattaaatttactgaAACAATTAAAAGGTCGACCGAATGTTTATTTTGCGACGAAAGCTTTTTCCAGGCCGACGAACTTGAAGCGCACATGATTGACCATTATCAAGGTAACCTCAATTCTGTTGAGTTACAAAAGGATGATGAAGTCGATTCAGAAAATTTTGTCTGCTCCATTCAAACTggcgaaaaatccaacaaatgcAAATTTTGCGATAGATCATTTAAGTTCAGGCAACAAAGGTCGCGACACGTTCAAATCAGTCACACAGATCAATGTCAGCATAAATGTGAAATATGCCAAGCAAGTTTTTTCCGCGCAGGTGAGCTTAAACGTCATGTGCCCTATCATGTTAATGATGGAGTGACTGTAAATCCTGATACAATACAAAACGAGGCTGGCATGACCAAACCACATCTCTtgcaaaatgttttaagtttcgTCAATAAAGATCTTGACGAGAATATTATTGAACTATCTCCACAAAAAAAGGAGGAAATTAACGCACAATGCCCTATAAGTAATAAGTCACAGAGTCCAGTTGATACCAATGAAATGCCTCATAAATGCCGATTTTGCGAAAGATCATTCAAGTACAGGACACAAAGATGGCGACATGTTAAAATGAGCCATCCCGAGCATTGGCCTcataaatgtgaaatatgttACATAAGCTTTTTCCGGGCGAGAGCGTTTAGAAAGCATATGGTTCGCCACAAAAAAAATAGAGTAATTGCAGATGTTAACAAGTTACAAAACGGGAATGAAATGCTGGATCAGATCAAAATAGAAACGGAATgcacaaaagatattaaatcaCAAAGCTTACTTGATACCGATCAAATGCTTTTCAAATGTCCATATTGCGATAAACTATTTAAGTGCCTGCAGCAAAGGATACGACATATTAAAACGTCGCATATCATTGAGGGGCCGCATAAATGTCAATTTTGCGGCACAAGCTTTTTCCAGGTGGAGAAACTTGAATCGCACATGGTTCACCATATTGGTGCTACCGTGACTATCGATGCTCAGATATTACAAAAGAATGATCAAGTGCAAACTGTAAGTGAACTACCGTATAAATGTGCATATTGTGATGGGTCATTTAAGTTCAGAGAGCAAAGATCGCGACATGTTAAAAGGAGCCACCCAGATCAGTGGAAGCATAAATGCAAAattgccaaataa
- Protein Sequence
- MVNDSDEDELVVGHVIDDWDTMNKTICTEDQIIEVKHGCGTCEQTFPRLEDLNEHKLFCPVNYDIPQEALQPEEPQLPKKKTRLCFCCEEDVMDAHKGTIQCTKCDLKFYTNFGRDRHTYLLHAEDTEYQCNSCNAVCRNIRIFDLHMLAQHAPIRPFTCDFCRRSFLLKCSLAMHLKQPLCSGPNNEKALSCTECKQKFTTLDDIYEHTHNGVGSPSKKFNFQCSYCDKWFCALPLLSMHSRSHKDVKMFPCEECDKSYGNIGLLRKHRQIHAVQGSYSCPYCDKFFVFKQQQLRHIRGHKLSTVTRKSRRRIRPRGRPRKSSKIRQVKMHKDDMIEDVVNRKREILIGKEPYKCPFCEETFNYTQERVQHVISIHADDWPHKCETCNECFVRADDHKAHMFQHINNPVVLETLPLQNEEVESKSILSSHHPIPADGNAYKCGHCDKTFKFSQQRLRHTYKFHKDEHLHTCKICNKTYMRAETLEIHMTLHSSQHLNLDALPFRKKTEIKEEPPLTIEPENQFDSGERPYKCEEKPSTFTQKRIRHVMIHHTNERSHKCDICDESFMKAEELNAHKVHHTDETLIIDSWKLQRNDEITATTEKKWRHLKFSHTNQEITVDELNTQENPHIVDKESIIHSDQTSHNCLFCGNCYTQEEELRAHMIHHFGGTVSINNEIKCRQRRLQHVKTSHTDQERDINHHIGDDITLDANTFQLEDERLSKFEISKNIDQNRQKTNRKGKLLHRNNCSPNKCRFCESSFKYRTQRWRHVKISHPDQWPHKCEICGTIYSRAGQRKKHMVQHFETVEVVDPLQIEGATIPEFKVTIKLHHNIPTDKGSTNENEKHCRNLDSRGIEILKSPWKERPYKELKPPKAQCIDSNKLRKKMNLKPNKCEFCEKSFKFREQRSRHVKMSHSDKYPHTCDVCDASFFKARELEEHMICHVTDGIIVNADTLQNESEITARYSPLHMTHTIKEYHKCVFCGKKFPQTDELDAHMIHHIGATATIESTELQKEHVAKSTEQQLLKCRFCEKSFKFRQQRLRHVKTNHPNQRPHHCKICFASFFRASGVKRHMVHRHGNDVILQAFAIRNEDDIESREYNDTEISSDVTVQYQNPIKSDCTMNGDSYSPLRSKEMPNKCRYCEKSFKFRQQRLRHVKISHSNQWSYKCEVCHASFFRLSALTAHKVQHAGNEVISNAINFQYQQTIKSHRDTKTDECLRNETSLCNKENRNEIIYADTLQEVVETPTESEMSDKSFRSLDISDVPYKNRNIKFTETIKRSTECLFCDESFFQADELEAHMIDHYQGNLNSVELQKDDEVDSENFVCSIQTGEKSNKCKFCDRSFKFRQQRSRHVQISHTDQCQHKCEICQASFFRAGELKRHVPYHVNDGVTVNPDTIQNEAGMTKPHLLQNVLSFVNKDLDENIIELSPQKKEEINAQCPISNKSQSPVDTNEMPHKCRFCERSFKYRTQRWRHVKMSHPEHWPHKCEICYISFFRARAFRKHMVRHKKNRVIADVNKLQNGNEMLDQIKIETECTKDIKSQSLLDTDQMLFKCPYCDKLFKCLQQRIRHIKTSHIIEGPHKCQFCGTSFFQVEKLESHMVHHIGATVTIDAQILQKNDQVQTVSELPYKCAYCDGSFKFREQRSRHVKRSHPDQWKHKCKIAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -