Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0013 2 10.4 0.8 15 40 62 84 54 86 0.85

2 9 0.2 3.1e+02 3.3 0.8 18 38 93 110 85 110 0.76

3 9 0.063 99 4.9 2.2 13 38 116 138 105 145 0.76

4 9 0.00095 1.5 10.8 2.4 3 40 135 170 133 173 0.85

5 9 0.21 3.2e+02 3.3 1.6 18 27 179 188 171 196 0.87

6 9 0.00063 0.98 11.3 0.6 17 41 206 227 191 229 0.85

7 9 0.066 1e+02 4.8 2.8 18 40 242 261 234 267 0.76

8 9 2.4 3.8e+03 -0.2 1.7 17 30 269 282 258 292 0.70

9 9 3.4e-05 0.054 15.4 0.2 15 41 295 318 286 319 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0013	2	10.4	0.8	15	40	62	84	54	86	0.85
2	9	0.2	3.1e+02	3.3	0.8	18	38	93	110	85	110	0.76
3	9	0.063	99	4.9	2.2	13	38	116	138	105	145	0.76
4	9	0.00095	1.5	10.8	2.4	3	40	135	170	133	173	0.85
5	9	0.21	3.2e+02	3.3	1.6	18	27	179	188	171	196	0.87
6	9	0.00063	0.98	11.3	0.6	17	41	206	227	191	229	0.85
7	9	0.066	1e+02	4.8	2.8	18	40	242	261	234	267	0.76
8	9	2.4	3.8e+03	-0.2	1.7	17	30	269	282	258	292	0.70
9	9	3.4e-05	0.054	15.4	0.2	15	41	295	318	286	319	0.84

Coding Sequence: ATGGACGAGAGAGACCCACTCCAAATTGATGACGATATTGAAGTAGTAGTGCCGATTGATCCGCTTTCGGCCGAAATTAAAGCAGTCGATGTGAGTGATTTTATAAAACGTGTAGAGTGTAAAGAATGTGGAGTGGGATTTGATTTGGCCCCTGAGCTAGCGGAACATTTAAAATCTCATCAAACGGGGCTCAAATGCGAATATTGCGATCGGATTTTTACACGAAGAACCAATTTACTAGCTCATGTACGGGTTCATCTTAACGTTAAACcgtataaatgtaaatattgtggCCTGGAATTTCGGAAAACATCGGAGCTCTTGAAACATGAAATTTACCACACCGGGGACACAAGCCTGCAGTGTAAGATTTGTAAACTAGTCCTCAGCAGCCGCGACCGTCTTAAGAAACATAAACTGCGACATAAATCACGTGAAAAGGATGAATTTAAGTGTGAAATTTGCGGCAaggattttaagaaaattaagaatttaaagcTTCATATGAGGTTGCATACCGGAGATAAACCTTTTCACtgtaaaatttgtggaaaacgTTTTTCCCACTGTTCCGTATTTACCATTCATCAGCGGACACATACCGGCGAACGGCCATTCCAGTGTAAAATCTGTGCTAAATCATTTCCTCAGAGTTCCAATCTTATTACACACATGAAAAGTCATGCTGAAGCGCTCGGAATTTTGGACAAAGTTAAGATACATCACTGTGAGATTTGTGGTAAATCATTTTCGCATAAACCTCATCTCAGTCGACATATGCGAATTCATACAGGAGAGCGCCCATATAAGTGTGACGTCTGCAAGAGGAGCTTTACACAATCTGGATCATTGGCCGAACATATGCGGGTGCATACTGGAGAGAAGCCTTATAAATGTGAATACTGCGGAAAAGATTTTGTGCAGTCGAATGGGTTAATCAAACACTTGAAAACCCATGAatcataa
Protein Sequence: MDERDPLQIDDDIEVVVPIDPLSAEIKAVDVSDFIKRVECKECGVGFDLAPELAEHLKSHQTGLKCEYCDRIFTRRTNLLAHVRVHLNVKPYKCKYCGLEFRKTSELLKHEIYHTGDTSLQCKICKLVLSSRDRLKKHKLRHKSREKDEFKCEICGKDFKKIKNLKLHMRLHTGDKPFHCKICGKRFSHCSVFTIHQRTHTGERPFQCKICAKSFPQSSNLITHMKSHAEALGILDKVKIHHCEICGKSFSHKPHLSRHMRIHTGERPYKCDVCKRSFTQSGSLAEHMRVHTGEKPYKCEYCGKDFVQSNGLIKHLKTHES

Sequence clustering based on sequence similarity using MMseqs2