Ngue051868.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829915.1:141844856-141871206[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.42 5.5e+02 2.2 0.0 17 31 86 100 81 106 0.84 2 2 2.3e-06 0.003 19.1 0.0 9 43 154 193 149 195 0.81
Sequence Information
- Coding Sequence
- ATGGGCAGAATCAAAAATGTGCATACTGAAAGTGATGGTGTCACAAGACTAGTGATAATATTCGATGGATTTAACGTTGGCCGCTTTGATGAAGGCCTAATTGATACAGATAGTGAAATTGAATCTAGTTTAAGTCCTGTAGGTGAATTGCCAGGATGTCCGGAAGGTTTTATGCAGTTAAGTGAATTAGGTCGCCCATTTACCGGTGGGTCTTGGTGTGGTTCAGCTACAGGACATCAATTATATTATAGTGAAACATCAACAGTAACTGCATCAGTTAAGTACAATGTGAACCATGAATTGCTTCACACGGAAACAACGCCTCGAACTAGTGACGCTGTAATTGAAAATAGACGTTCAGTTGTGTTGACTCAACGTGTTTATCGCCAAAAATATCGCGGCAAACAGGCACCGTCTGACAACACTATTCGTCGTTTGGTGTCGAATTTTgttgaactggttgaagcggtCAGAGAGAGCGTTGCCCAGAATCCAAAAGTGTCGTATCATCGCCGTGCTCAGCATTTTGGCGTCAGTGGAACCACTTTGCAGCGCATTTTGAAGACTAATTTGCATTTGTATCCCTATAAGGTGCAATTAACACAAAGAATATTCTCAACGTCGCTTGAAATACGATCAAACAGTCGCTCAAATCGTTGA
- Protein Sequence
- MGRIKNVHTESDGVTRLVIIFDGFNVGRFDEGLIDTDSEIESSLSPVGELPGCPEGFMQLSELGRPFTGGSWCGSATGHQLYYSETSTVTASVKYNVNHELLHTETTPRTSDAVIENRRSVVLTQRVYRQKYRGKQAPSDNTIRRLVSNFVELVEAVRESVAQNPKVSYHRRAQHFGVSGTTLQRILKTNLHLYPYKVQLTQRIFSTSLEIRSNSRSNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -