Ngue052425.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829915.1:149772922-149773650[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-11 3.8e-08 34.7 0.1 5 39 101 135 99 141 0.90 2 2 3.6e-09 4.8e-06 28.0 0.1 6 39 191 223 188 227 0.86
Sequence Information
- Coding Sequence
- ATGAGCTATAATGGAATAATGCTTCCTACTACTACAAATgaccaatattatgaaaactataaaattattaaaacggaGTACGAAGATGATATTTCAGAGTCTCTGGAGCACTCCGATTACAACGACAATACTAGTTATATTAGTACGCAAATGCCCATTGAAGAAGCTATCGCAGACATAAAAATTGAAGAGAAGCCAACCAGGGGCAATTCTCTAAAGTACCCGAAACCTAAACCACCATTAAATTTGCATGAAAGATTATGCGACTTACCAATAgaattacgaaataaatataaacatctCAATGAAGCGCTAAATTCTATTATTACGGACGGTATGAGCTACAAGAAAGctgcaaaaatatacaaaatttcatcTACAGTACTTTGGCgacgcgttaaaattataaagcaagCCCGACGAACAATGGCAAATACAAAGAAAAAGATTAAACCAATTTCGCCTAAAATAGAAAACCAGGAAAAAActgatgatgttgatgataaTGTTCCACTTATAAATTTGTATCGTTTAAAGAGGAATTTAAATACGGATATGAATCCACATATGCATGAAGCCTATCTCGCCTATAAAAATGGTATGCTACAAACTCGAGCGGCAGCACTATATAACATACCTAAAACTACATTTTGGCGATATGTAAAACGCATGGCCATTGAGGAAGGTCCCATTACGTCCAGTACGACAATAGCGAATAATGGAACCTAa
- Protein Sequence
- MSYNGIMLPTTTNDQYYENYKIIKTEYEDDISESLEHSDYNDNTSYISTQMPIEEAIADIKIEEKPTRGNSLKYPKPKPPLNLHERLCDLPIELRNKYKHLNEALNSIITDGMSYKKAAKIYKISSTVLWRRVKIIKQARRTMANTKKKIKPISPKIENQEKTDDVDDNVPLINLYRLKRNLNTDMNPHMHEAYLAYKNGMLQTRAAALYNIPKTTFWRYVKRMAIEEGPITSSTTIANNGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -