Nfla032224.1
Basic Information
- Insect
- Nephrotoma flavescens
- Gene Symbol
- -
- Assembly
- GCA_932525705.1
- Location
- CAKOBH010001251.1:327199-328847[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.018 3.3 10.0 0.5 1 23 139 161 139 161 0.97 2 11 1.9e-05 0.0035 19.4 2.5 1 23 167 189 167 189 0.97 3 11 0.00018 0.033 16.3 2.4 1 23 195 217 195 217 0.98 4 11 3.3e-05 0.006 18.7 2.8 2 23 224 245 223 245 0.97 5 11 0.013 2.4 10.5 0.7 2 23 251 273 251 273 0.85 6 11 0.013 2.3 10.5 1.7 2 23 289 310 288 310 0.91 7 11 0.074 13 8.1 3.8 3 21 325 343 323 345 0.93 8 11 3.7e-05 0.0067 18.5 1.4 1 23 364 386 357 386 0.97 9 11 0.00026 0.047 15.9 1.2 1 23 392 415 392 415 0.96 10 11 0.53 95 5.5 0.3 2 23 424 445 423 445 0.83 11 11 0.02 3.6 9.9 6.1 1 23 451 474 451 475 0.96
Sequence Information
- Coding Sequence
- ATGGAAATCAAAATAGAAAAAAATTCGTGCCGCATTTGTTTAACAAATGTTGGCAAAATATCTTGTTTTAGCGACCAAGGGGACGGAATTCTGGTCTCTGAATTAATCAGTAACGATAATTTGCCAGATGCTGTGTGCACTACTTGCATGGAAAATATCAAATATGCTGTTAAAACAAAAGAACAAATCCTTAATTCAGAGATTTTGCTAAGTACATATTTGGAAATAAATAAATCGATAGCAGAGGAATCCGAAACAGTGCAGACCGACGATGGTATACCGAAACTGCTTCATTTGGAAGTGGAACATTTAAATATTGAGTGTCTAGACAACGGATTTCAAGATTCTGACAGTGGATCTCCCAATCCTATGATTAATATGGAAAAACCGCCCGACCTAAGTTTTCCAGGAATGTATGATTGCCTGAAATGTGAAGTCAAAGCCGCTACTTACAAAACATTACTTTCTCATATGAGATCTCATAAAGGTATAATACTATATGAATGTGAAATTTGTGGTAAATCATTCCACTTTCAATCTTCTTATCGTACACATCGAGTTATTCATCGTGATTCTAGACCATTTAAATGTACTAAATGTTATAAAACGTTTAAGACACCTAACCGTGTTGCGCAACATCTCTTAACCCATCAAACGGAACCAGTAATACCGTGTCCAAATTGTGAAAAAAAATTTTGCCACATGAAGGCACTAAGACAGCACATACGGATTCATAATAAAAGAACTGAAGAATGTCCGATTTGTAATAAAACATTTCAACATTCGACCATTTTGGGAACACATATATCACTATATCATCCTGGTCAGGCAAACAAGCAATCAGTTTCATCAAGTCATCTTACTACTTGTCATATTTGCGGTAAACAAATGACTCGCAATAATCTGCAGAGGCATATCGACGCTAAACATTTAGCCTCAAATGACATAAAAGAAAGTCGAAAGCCGGTCCACTGTACATATTGCAATAAAAGATTTCTCACTACTTCCGCTTTAAATATACATTTACAATGCCATTTCAATTCCCGTAAAGTGCCAATCGATGCTAAAACGAAGGAACAATTGCTAAAACATAAATGTGATGAATGTGACAAAGCATTTACAAGTACAGTGCTTTTAAAGACGCATAAAGTAAGTCACTCTGGTGTGAAAGACCACGTATGTTTATATTGTGGAAAGCGTTTCGCATTGAAAATGTATTTAGTTCAGCACGTTCGATTAAATCACGAACAAGGTAATCCAAGAAATTGCTCTTGCGATATTTGTGGTAAAGTGTGGTTAAATAAATGGGCGAGGGAAGCACATATGCTATCACATACTCGAGAGACACCATTCCATTGTAATTTTTGTAATTCAAAATTCGTATATGCAAAATCGCTACGATTGCATATAAGGAACAAACACCATACATAA
- Protein Sequence
- MEIKIEKNSCRICLTNVGKISCFSDQGDGILVSELISNDNLPDAVCTTCMENIKYAVKTKEQILNSEILLSTYLEINKSIAEESETVQTDDGIPKLLHLEVEHLNIECLDNGFQDSDSGSPNPMINMEKPPDLSFPGMYDCLKCEVKAATYKTLLSHMRSHKGIILYECEICGKSFHFQSSYRTHRVIHRDSRPFKCTKCYKTFKTPNRVAQHLLTHQTEPVIPCPNCEKKFCHMKALRQHIRIHNKRTEECPICNKTFQHSTILGTHISLYHPGQANKQSVSSSHLTTCHICGKQMTRNNLQRHIDAKHLASNDIKESRKPVHCTYCNKRFLTTSALNIHLQCHFNSRKVPIDAKTKEQLLKHKCDECDKAFTSTVLLKTHKVSHSGVKDHVCLYCGKRFALKMYLVQHVRLNHEQGNPRNCSCDICGKVWLNKWAREAHMLSHTRETPFHCNFCNSKFVYAKSLRLHIRNKHHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -