Nfla001144.1
Basic Information
- Insect
- Nephrotoma flavescens
- Gene Symbol
- -
- Assembly
- GCA_932525705.1
- Location
- CAKOBH010000029.1:863214-864969[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.11 20 7.6 0.2 1 23 122 145 122 145 0.96 2 11 3.5e-05 0.0062 18.6 0.1 3 23 271 292 269 292 0.96 3 11 0.0021 0.38 13.0 0.5 2 23 301 323 301 323 0.96 4 11 0.00015 0.026 16.7 10.0 1 23 329 351 329 351 0.98 5 11 0.00019 0.034 16.3 0.7 1 23 357 379 357 379 0.97 6 11 0.031 5.6 9.3 1.3 2 19 386 403 385 406 0.94 7 11 2.3e-07 4.1e-05 25.5 1.0 1 23 418 441 418 441 0.97 8 11 0.00018 0.032 16.4 8.0 1 23 446 468 446 468 0.99 9 11 1.5 2.6e+02 4.1 0.7 2 14 474 486 473 496 0.67 10 11 0.055 9.9 8.6 1.5 2 15 503 516 502 522 0.83 11 11 0.65 1.2e+02 5.2 0.6 5 23 529 548 528 548 0.73
Sequence Information
- Coding Sequence
- ATGATCCCGCTTTCAGAAAATAGCTCTTTCCCACACATGGATGTGATTTGTCGCACTTGTTTAATCGAGTCCACTGGTATGAAGCATATATTTATGGATGACGGTGCAATCTGTAATAAACTACAATCGTGTTCCGGTTTAAATATTCACGAAAAGGACGGGTTCCCGTCTAAAATTTGCTCTAGTTGTTTAATTAAAGTAAACATCTCGTACGAATTTCGGCAGCAGTGTGAAAAGTCGCACCAGGCATTGATAAATATTGCGGGGGCAAAAGTGAAAGTAGAATTTGATTCTGAGATCGAAAGTGGATCCCAATATGAAACTAAACAGCCAGATATAATCCAGGTTAATAGTGTAAACATCTATAAATGTAAGCTATGTCCAAATCAGTATTCAATGATCTATTTGATGGAGCAGCATTTGATTGTTGACCATCCAGATGAGCGACGTGACACAGAAATAGAGAAACGAAATTCTCTAATCGATGCAGATGGGAATCATGTTGAAATGCCTGATAAAAATACCAATTCCGTTGCAAACGATCTGATCATGGATTATGTCGAAGAAAAATATCAAATTTGCGAGTTAGATACACCTGGAATAAATTCGAGTGTTGAAGGTGATATCTGTTTTGGACCCGCAAAAAAGACATCAAATGAATGCAGTGAAAAAGGCGAACTTATTACTTTAGAAACCACCCAAATCCAAAGAAAGGACAGTAGCGATAAATCAGTAAATTTTTTAAACCCTTCAATGAATCAACCTAAGAAATCACAAAAAAGAAAAACTTTGCCTACTGACACAGATATCTGTCAAATATGTCAAAGGGGGTTTGCTACTCCCAGAAATCTCTTAATTCATTTGAGAATAAGTCATCGACCTCTTACGAAATTGGCTCCAAGCTGTTCTCTATGTAATGAAACCTTCGAAGGAAAAGCCCTTTACTATGACCACATGAGATCCCGGCATAAAGAATGTAAACAACATAAATGTGATCAATGTGATTTAAAATTTTCTAGGCCTCATCACCTCAGACGTCATCATCTTACACATTTTGGCCTGAAACTTTTTCCGTGCAAACTGTGCGATAAGCAGTATACTACAGCGGGTGGCAGAAAACGGCATATGGAATACCATTTAAATTGCCATGCTAACGAATGTGATAAATGTGGTACGATGTGTACAGAGGAGGAACATTTCAAAAAACATGGTGAAGTTCGACCTAGGCGCAAGCAAAGCCTGCACAACAATTTTGTATGCACAACATGCAATAAGGCATTTAACCGTAAAGACAACTTAAAAGTTCACATCTTAAGAATGCACAAAGAACCTTGTTATCAGTGTCCACATTGTGATAAAAACTTTTCTCATGAACTTCATTTCAAGTATCACGTTCGATCTCACACAGAGGAAAAACAAAAGTGTGAAATATGCGGCGATAGTTTCCGCTTTTTATCACAACATAAACTTAATAAGCACGGGAATAAAAAATCGCGTCCCAAACTCAAATGCGATATATGCGGTTACAGTTTCCGCTTTCTATCACATCACAAACGAAATAAGCACGGAAAAAGGAAACGAGTGAAATGCAACATATGCGGGGCCAATGTTCGTCAGCTAATACGTCATAGACGTTATAAACATGGAATCTTTGAGACAGAGATCAATAAGTTTATCACCTGGTTCGTGGCAACAGTAAAATGA
- Protein Sequence
- MIPLSENSSFPHMDVICRTCLIESTGMKHIFMDDGAICNKLQSCSGLNIHEKDGFPSKICSSCLIKVNISYEFRQQCEKSHQALINIAGAKVKVEFDSEIESGSQYETKQPDIIQVNSVNIYKCKLCPNQYSMIYLMEQHLIVDHPDERRDTEIEKRNSLIDADGNHVEMPDKNTNSVANDLIMDYVEEKYQICELDTPGINSSVEGDICFGPAKKTSNECSEKGELITLETTQIQRKDSSDKSVNFLNPSMNQPKKSQKRKTLPTDTDICQICQRGFATPRNLLIHLRISHRPLTKLAPSCSLCNETFEGKALYYDHMRSRHKECKQHKCDQCDLKFSRPHHLRRHHLTHFGLKLFPCKLCDKQYTTAGGRKRHMEYHLNCHANECDKCGTMCTEEEHFKKHGEVRPRRKQSLHNNFVCTTCNKAFNRKDNLKVHILRMHKEPCYQCPHCDKNFSHELHFKYHVRSHTEEKQKCEICGDSFRFLSQHKLNKHGNKKSRPKLKCDICGYSFRFLSHHKRNKHGKRKRVKCNICGANVRQLIRHRRYKHGIFETEINKFITWFVATVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053855;
- 90% Identity
- -
- 80% Identity
- -