Nfla058538.1
Basic Information
- Insect
- Nephrotoma flavescens
- Gene Symbol
- -
- Assembly
- GCA_932525705.1
- Location
- CAKOBH010006900.1:28159-31262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.12 21 7.5 1.5 1 23 64 88 64 88 0.95 2 16 0.0012 0.23 13.7 0.4 2 23 95 116 94 116 0.94 3 16 0.016 2.9 10.2 0.2 3 23 123 145 122 145 0.92 4 16 0.00045 0.081 15.1 0.3 2 23 153 174 152 174 0.97 5 16 0.00086 0.16 14.2 0.2 1 23 183 207 183 207 0.97 6 16 0.0038 0.68 12.2 3.2 1 23 213 235 213 235 0.95 7 16 0.0015 0.27 13.5 0.1 1 23 325 349 325 349 0.95 8 16 0.00011 0.02 17.0 0.5 1 22 355 378 355 381 0.91 9 16 0.036 6.5 9.1 2.3 1 23 485 510 485 510 0.92 10 16 0.0026 0.47 12.7 1.1 2 23 513 535 512 535 0.89 11 16 0.0018 0.32 13.2 0.2 3 23 560 582 558 582 0.94 12 16 0.024 4.3 9.7 4.3 1 23 615 637 615 637 0.99 13 16 0.038 6.8 9.1 1.3 1 19 648 668 648 668 0.95 14 16 0.0048 0.86 11.9 0.9 1 23 688 713 688 713 0.94 15 16 0.0068 1.2 11.4 0.1 1 23 752 776 752 776 0.94 16 16 0.0019 0.34 13.2 6.1 1 23 782 807 782 807 0.95
Sequence Information
- Coding Sequence
- ATGGATCTTAACGGCACAAGTATAGTTTCTGAAGATAATATTCTAAAGTGTGATTGTTCCAATTGTGAATTGGTATTAAATAGTAATGGTTCCTTTGTCGGGCATGCTTGTAGTGTGGAAGATTGTAAACAAATATTCAATGCTGTCCCGCGTTTACAAAATCATAGGGTATACCACCAAGGAAACGCATTTGCTTGCACTTGGCAGGATTGTAGCCGAACTTTTGCATTTAAAGAAATATTAAAGCTCCATTTATGTATGCACGCCCCGACCCAATGCTTGAAATGCAAGGAGTGCAATGTGAATTTTAATAAGAAGACTGATTTAGAAGAACATTTGGCGGACCATCGACCAAAAGTATTTGGATGTACTTGGCCAGATTGTAATCGTAGTTTTGCCTTCAACGAGATATTAACGCTGCATATGCGTTTGCATATGGGCGATCGAGAAATTTTAAAATGTAAGGTGTGCGATATGGAATTCTACGAGAACTTTCAGCTCGAAGTACATTTAAGAGAACATTCAGTGGTAAAACAACAAAAATCTTTTTCCTGCACATGGCCAAATTGTGGGCAACGTTTTGCGTTCAGTGATGTTTTACAGTTGCATTTACGAATGCATGCTGGAGATACAATTTTTTTATGTAAGTTGTGTGATATGGAGTTCTACTCAGAAGACTATTTAACTAAGCATACAAAGCATCATTTGAATAATACATACGGCAAGCCTAGGGAAATGCAAAATAATGATGCCCTGTCTGATAGTACTCATGCCATGAAGCCTCTGGAAGATACCAATGTTAATGACAATCTAAAGTTTCACAAATTGAAACAAGAAGCGCGACATAATAAGCGGATGCATTTAATTAGAAGTGCCAATTTAATTAAACGGCAATATACAAATAGGTTTAGATATTTTTGCATTTGCTCTAATTGTGCGAATAAAAAGCACAAGCCTAACGGCCCAAAGCAACATATCTGCGATTATATTGGATGTGGCAAGCTGTTTTCGGCTCCGTCGCTTTTAATTAATCATGCACGAGTTCATTCAGAAGAGCGCAAATTTGTATGTGATTTTGAAAATTGTGGAAAAGCTTTTCGAACCGCCGGTGCTTTAAGATGGCATCGTCGTTTTAAGAAACACTCCAAAATTCATGATGATTTGGTAGATACGCTTCCAGATCGACAATCATCACGAATTCGTAGAAATGGCCATCCGCTTCTTTGTCTCTGTGCTAATTGTGTAAATGGTAACCTTGATCCGAATACTCCAAAAAGAAAATTAATGCATGATCTTATAGACGATGAGTTGAATTCAGCAGAAACACAACATTCAGAAGTACATTCTGAATCGAGTTCGCATATAAGAGATTTAAATGATTCTGCGAGTTGTTCAAAAATCATAGAGGGTCCTGATCCAAAGCCTGACGTGAAGCGTAAAAAGAAGAAAAAGTTTACATGTGGGTGGACAAATTGTACGAAATCATTTAGTCGAAGCTGGCCGCTGCGTTTGCATTGTAAAACCGAACACGGAACAACTTGTTTAAAATGTTGGAAGTCGTTTAAAGACACCAAATCTCTGAACATCCATCGCGTCGAGTCCCATAATATGACCCCCATAATTAGATCTAATAGTCTCTCTATTAAAACTGAAACGAATGCTCCAAAACCGGACATCTGTAATTTCAAAGGATGTGACAAATTATTTTCATCGCCAGAACTTTTATTAGTTCATAAACAAACTCATACAGAGGCGGATGCAGTTTCAAGTAATTTGATAAATTGCATAGAATACCCTAATAAAGAAAATGTGCAGCCTGCTCGACAATTTGACGAAACACCTTATAAGTGTAAGGTGTGTGATTTCAAATGTACATGGCTTTACGATTTATCGAATCATCAGAAAACACATAATAGGATTATACCTGAAACTCAGACTGAATTTATATGTACTTTTAAAAATTGTGGCAGATCATTTCACACCGCATTTGATTTGAACTGGCATTGTCATTTCGCAAAACATTATAATCCTCTTCCGTATTTTGCAGACGAAAAGGGTCGATTTGTGTGTACCTGGGGCAATTGTACGAAGTCATATAAAGGGAAATCAGGCCTGAGTAACCATCGTAAATTTGAACATGGCTATAGAATTATGCCCAAACGACTTGACCCAGCTATTCCGATAAAATATGTTTGCTGCATGTGTCCTATTTGCGCAAACGGTATACAAACTTCAAATAATCTACCAGAAATGCACATTTGTGATTTCAATGAATGTGGCAACATATTTCCAACGCCAGCACTGTTATTAATTCATAAACGGATTCATATTGAGGATGGACCATTTAAATGTAAGTTTGATAATTGTACTTACTCTTTTAAAACAAATTCCTTGCTCGAAAGACATCATTGTCTTCCACATAATAATGAAAATCGATACAGTTGTTTGTGTGGCTTCAACTGTATGTGGCTTTATCAATTATGGAATCATTTAAAGTTGCATGAACAAACTAAGGAAAATGGTAATATACATCAAAATTCTAAAGCTAATAGAATTACTGATGAATATCTCCGTGATCGAAATGCGACAAGTGGTACAAACTCAACGATGTGTAATACCACAGAAAATACGGCAAGGAGTTGGCATCAGATAGTAGAAAATAATGATACTTTAGTTTTTAAGTGTGACACAGAAAATTGCACAAAGTCGCGTGAATGGCATCGAACAAATAGTCATGCAGCGACTAAATCAGTTAGTCCGGACGCATGTGATACGCCGGTATCGACTTCACCGGAAGTACCGGAACAGGAAATTTTGTTAAATGATTTAATGCAATTTCTTAACGAAAACATAAACTAA
- Protein Sequence
- MDLNGTSIVSEDNILKCDCSNCELVLNSNGSFVGHACSVEDCKQIFNAVPRLQNHRVYHQGNAFACTWQDCSRTFAFKEILKLHLCMHAPTQCLKCKECNVNFNKKTDLEEHLADHRPKVFGCTWPDCNRSFAFNEILTLHMRLHMGDREILKCKVCDMEFYENFQLEVHLREHSVVKQQKSFSCTWPNCGQRFAFSDVLQLHLRMHAGDTIFLCKLCDMEFYSEDYLTKHTKHHLNNTYGKPREMQNNDALSDSTHAMKPLEDTNVNDNLKFHKLKQEARHNKRMHLIRSANLIKRQYTNRFRYFCICSNCANKKHKPNGPKQHICDYIGCGKLFSAPSLLINHARVHSEERKFVCDFENCGKAFRTAGALRWHRRFKKHSKIHDDLVDTLPDRQSSRIRRNGHPLLCLCANCVNGNLDPNTPKRKLMHDLIDDELNSAETQHSEVHSESSSHIRDLNDSASCSKIIEGPDPKPDVKRKKKKKFTCGWTNCTKSFSRSWPLRLHCKTEHGTTCLKCWKSFKDTKSLNIHRVESHNMTPIIRSNSLSIKTETNAPKPDICNFKGCDKLFSSPELLLVHKQTHTEADAVSSNLINCIEYPNKENVQPARQFDETPYKCKVCDFKCTWLYDLSNHQKTHNRIIPETQTEFICTFKNCGRSFHTAFDLNWHCHFAKHYNPLPYFADEKGRFVCTWGNCTKSYKGKSGLSNHRKFEHGYRIMPKRLDPAIPIKYVCCMCPICANGIQTSNNLPEMHICDFNECGNIFPTPALLLIHKRIHIEDGPFKCKFDNCTYSFKTNSLLERHHCLPHNNENRYSCLCGFNCMWLYQLWNHLKLHEQTKENGNIHQNSKANRITDEYLRDRNATSGTNSTMCNTTENTARSWHQIVENNDTLVFKCDTENCTKSREWHRTNSHAATKSVSPDACDTPVSTSPEVPEQEILLNDLMQFLNENIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01052685;
- 90% Identity
- -
- 80% Identity
- -