Basic Information

Insect: Nephrotoma flavescens
Gene Symbol: -
Assembly: GCA_932525705.1
Location: CAKOBH010001525.1:29005-31270[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.011 1.9 10.8 0.2 1 23 154 177 154 177 0.96

2 12 0.00031 0.056 15.6 0.4 1 21 184 204 184 205 0.94

3 12 0.0028 0.5 12.6 0.1 1 23 294 317 294 317 0.96

4 12 0.00035 0.064 15.4 6.2 1 23 325 347 325 347 0.98

5 12 6.2e-06 0.0011 21.0 3.6 1 23 353 375 353 375 0.99

6 12 5.7e-06 0.001 21.1 3.7 2 23 382 403 381 403 0.97

7 12 0.00087 0.16 14.2 2.7 3 23 410 431 409 431 0.95

8 12 3.6e-06 0.00065 21.7 3.5 2 23 495 516 494 516 0.97

9 12 7.4e-05 0.013 17.6 3.0 1 23 535 557 535 557 0.95

10 12 0.00019 0.035 16.3 0.7 1 23 563 586 563 586 0.97

11 12 1.9 3.4e+02 3.7 1.4 1 23 594 616 594 616 0.72

12 12 0.0007 0.13 14.5 0.9 1 23 622 645 622 645 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.011	1.9	10.8	0.2	1	23	154	177	154	177	0.96
2	12	0.00031	0.056	15.6	0.4	1	21	184	204	184	205	0.94
3	12	0.0028	0.5	12.6	0.1	1	23	294	317	294	317	0.96
4	12	0.00035	0.064	15.4	6.2	1	23	325	347	325	347	0.98
5	12	6.2e-06	0.0011	21.0	3.6	1	23	353	375	353	375	0.99
6	12	5.7e-06	0.001	21.1	3.7	2	23	382	403	381	403	0.97
7	12	0.00087	0.16	14.2	2.7	3	23	410	431	409	431	0.95
8	12	3.6e-06	0.00065	21.7	3.5	2	23	495	516	494	516	0.97
9	12	7.4e-05	0.013	17.6	3.0	1	23	535	557	535	557	0.95
10	12	0.00019	0.035	16.3	0.7	1	23	563	586	563	586	0.97
11	12	1.9	3.4e+02	3.7	1.4	1	23	594	616	594	616	0.72
12	12	0.0007	0.13	14.5	0.9	1	23	622	645	622	645	0.95

Sequence Information

Coding Sequence: ATGGAAATAAACATTACCAGAAATACGTGTCGTGTTTGTTTAAAAAATATTGGATTAACACCCTTGTTTGGAGATAAAGGAGATGAATTAGCCGCTCAAATGATAAGCTCGCTCTTCAAGATTGATGTTATCAATCATGCAAATTTGCCTAATGCGATATGCAGAATGTGTATGGATGATATAAAAGCCGCAGTCAGGACAAAGGAGGCAATTATTAATTCAGAGATTATGCTAAATACATATTTGGAAATAAACAAACCTATTGTAGTGGATGATGTCCAACATTTCCGAGACAATAATGAAGATTCTACAAGTAACGATATTCCCAAACTTCCACTGATTAATACGGAACCGCTGGCTATTGAGCATTTAGATCAAATTGGCTCTCGAGTTTCTGGAGATGAAATCATCGAATCTATGAGAAATCTAAAGTCACCAAGCTTTATTTTTCCTCAAATGTACGACTGTGAGAATTGTGAAATCAAATTAAGTACTTATAAGGCACTGATTACACATATATCTAGAATTCATGCAAGAGAAGCAGCAGTATATGAATGTGAACAATGTGGCAAACCATATAAGTACCGCTCAAGTTATGTTACTCATAGTAGAATTCGCCAGACTACTAGGCCATATAAATGTAAACAATATGATGATAAGAGATTTAAGACTCCATATTTAGAAATAAACAAACCTATTGTAGCGCATGATGTCCAAAATTTCCGAGACAATAATGAAGATTTTACCAGAAACGATACTCCCAAACTGATTAATACGGAACCACTGGCTATTGAGCATTTACAGCAAATTGGTTCTGGAGATGAAATCATTGAATCTATGAAAAAACTAGAGTCGCCAAGCTTTATTTTTCCTGAAATGTACGAGTGTGAGAATTGTGAAATCAAATTAAGCACTTATAGTGCACTTATTGCACATACATCTAGAGTTCATGCTGGTGTAGATGCAGCAATATATGAATGTGAACATTGTGGCAAACAATTTAAGCATCACTCAGGTTATGTTTCTCATAGTAGAATTCACCGGACTACTAGGCCATATAAATGTAAACAATGTGGTAAGAGATTTAAGACTCCACACGCTATACAACAACATCGTTTAACTCACAAAACAGAGAAAATACTTCCATGTCCAAATTGTGATAAAACATTTTGTCACATGAAAGGTTTAAAAGCACATCAACGTACACATAACGAATTTACTGAAATTTGTGAAATTTGCAATAAAACATTTAAGCACACAACATTTTTAAAATTACATTTAGCTTCAAGACATGGCTTGCCAACGGGTCGCGGACAACAAACAAAAAAATACAGAAAGGTAGCTGTACAGCGATTACAAACATCCCTAAAGGGTCCCTGTGAATTTTGTGGCAAATTAATCGCATTTAATTATTTAAAGAAACATTTATATATCGCCCACAATTCAGTTGTACAATTACCAAATCTTAAAGATAGCAACATATCATGTTCGTATTGCGACAAAAAATTCTGCAGTAAATCCAGTTTATTGCTACATATGCAAAGCCATTTTAATTCAAACACGGGTCCATTGGATGTTAAAACACAGGACTTATATCTAAAATATAAATGCGATGAGTGTGACAAGCGGTTTACAACTTTGCAATTTTTGAAAAATCACAAAATATTTCACTCTGGAAAGAAAGAATACGTTTGTACATTTTGTAATAAAGGGTTTGCCTTTAAATGGTATTTAGATCGTCACGTACGTTTATTACACGATTCATCGAATCCAAGAAACTATATATGTGACGTTTGTGGTAAAGTATCAGCTTGTGGAGCGGCTAGAAGATCACACATGTTATCACATACCGGTGAAACACCATTCCCGTGTAAATTTTGTGACCTGAAATTCGTATATGCAAAATCTCTTCGAATTCATGTCCAAAACAAACATAAATCGAAATGTAACGATGAAAATATGAAAGATTAG
Protein Sequence: MEINITRNTCRVCLKNIGLTPLFGDKGDELAAQMISSLFKIDVINHANLPNAICRMCMDDIKAAVRTKEAIINSEIMLNTYLEINKPIVVDDVQHFRDNNEDSTSNDIPKLPLINTEPLAIEHLDQIGSRVSGDEIIESMRNLKSPSFIFPQMYDCENCEIKLSTYKALITHISRIHAREAAVYECEQCGKPYKYRSSYVTHSRIRQTTRPYKCKQYDDKRFKTPYLEINKPIVAHDVQNFRDNNEDFTRNDTPKLINTEPLAIEHLQQIGSGDEIIESMKKLESPSFIFPEMYECENCEIKLSTYSALIAHTSRVHAGVDAAIYECEHCGKQFKHHSGYVSHSRIHRTTRPYKCKQCGKRFKTPHAIQQHRLTHKTEKILPCPNCDKTFCHMKGLKAHQRTHNEFTEICEICNKTFKHTTFLKLHLASRHGLPTGRGQQTKKYRKVAVQRLQTSLKGPCEFCGKLIAFNYLKKHLYIAHNSVVQLPNLKDSNISCSYCDKKFCSKSSLLLHMQSHFNSNTGPLDVKTQDLYLKYKCDECDKRFTTLQFLKNHKIFHSGKKEYVCTFCNKGFAFKWYLDRHVRLLHDSSNPRNYICDVCGKVSACGAARRSHMLSHTGETPFPCKFCDLKFVYAKSLRIHVQNKHKSKCNDENMKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -