Basic Information

Insect: Nephrotoma flavescens
Gene Symbol: -
Assembly: GCA_932525705.1
Location: CAKOBH010001646.1:182146-183876[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5e-05 0.009 18.1 3.1 1 23 188 211 188 211 0.95

2 11 5.5e-05 0.01 18.0 1.1 1 23 217 239 217 239 0.98

3 11 1.1e-05 0.002 20.2 1.0 1 20 246 265 246 267 0.95

4 11 3.8e-06 0.00068 21.6 0.4 3 23 277 297 275 297 0.96

5 11 1.1e-06 0.0002 23.3 3.0 1 21 303 323 303 325 0.95

6 11 0.00016 0.03 16.5 3.4 1 23 331 353 331 353 0.98

7 11 9.8e-05 0.018 17.2 3.8 1 23 359 381 359 381 0.98

8 11 3.3e-07 5.9e-05 25.0 1.6 1 23 389 411 389 411 0.98

9 11 7e-06 0.0013 20.8 0.4 2 23 419 440 418 440 0.97

10 11 0.00057 0.1 14.8 0.4 2 23 487 508 486 508 0.97

11 11 1.4e-05 0.0026 19.8 5.8 1 23 514 537 514 537 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5e-05	0.009	18.1	3.1	1	23	188	211	188	211	0.95
2	11	5.5e-05	0.01	18.0	1.1	1	23	217	239	217	239	0.98
3	11	1.1e-05	0.002	20.2	1.0	1	20	246	265	246	267	0.95
4	11	3.8e-06	0.00068	21.6	0.4	3	23	277	297	275	297	0.96
5	11	1.1e-06	0.0002	23.3	3.0	1	21	303	323	303	325	0.95
6	11	0.00016	0.03	16.5	3.4	1	23	331	353	331	353	0.98
7	11	9.8e-05	0.018	17.2	3.8	1	23	359	381	359	381	0.98
8	11	3.3e-07	5.9e-05	25.0	1.6	1	23	389	411	389	411	0.98
9	11	7e-06	0.0013	20.8	0.4	2	23	419	440	418	440	0.97
10	11	0.00057	0.1	14.8	0.4	2	23	487	508	486	508	0.97
11	11	1.4e-05	0.0026	19.8	5.8	1	23	514	537	514	537	0.97

Sequence Information

Coding Sequence: ATGGAAATTGATTTGAATTTACTGGGCCCATTCAATCCGACAACAACAACTACAGTACCAGCAGTGACATCGACATCAGCGATAGAATTACCAGTGTTGTGCCGAAGTAGTGGTAGTGATACAAATAGTGAAAAGGATCGTATCTTGGATGAAAATAAGAAAATTATGAAAATTGAAGAGATTTGCTTTGATGATGGCGGAGGTGATACGGGAGAAGAGAAAAAAGTGTACTATGAATTAAAGCCAGTAGAGGCGCCACATGTTGTTTATCGTCGAATTGGTTGCTATTACGATGATTTCTGTATCGAAGAGCTCATCTCTGAAAAGACAATACTCGATTATGATCACTACATTGAAACCTCATCACTCGACTACTACTCGTACGATGAAAATTCGGCAGACGAGGAAGACAGTGACCACCATTGGGATGAGATTAGTAAATGGATTGAACGTGACAGTCGCGGTAACGGATTCGGTTCCAGCGGGCTACGCCTACATAAAATACGATACAATTCATCAGTTAGTAACGATGAAAGCGCAGATGATTTACCAGATGAGCCGTATCAATGTTCAAAATGCGACGAAACATTTAAGCGATCTCGTGCACTATACACTCATCTGCATCAAGTACACGGCCATGAAATGAACTATAAATGTTTTACGTGCAACGAGACATTTGAGACGCCCAATTCAATGATATCGCATATGAAACTCCACAAAGATATAAAGCGGCCATATGTCTGCAATGATTGTGGAAAAAAATTTAAAACGTTCGATTATCTGGAAAGCCATCGAACGAACAAAATGTGCAATACAACGCAAAGTATATGCGCTGTTTGCGGAAAAGAATTCAAAAATCAATTCAACTTGATTCGCCACCGTTCGGTGCATACAAACGATCGTCCTTTTAAGTGTTCCATTTGTGGTAAAACATTTAAACAGCAGGACAATCTCAGCATACACGTACGCTGCCACAAAACCGAAAAACCATTTAAATGTGATAAATGTCCTAAACGGTTCAAGGACGAGCAATATTTCGGGCGGCATAAAAAAATGCACGACTCTGATTTCTTGTTTCATTGTACGGTGTGCCGTAAACCGTTTCGCCTTCTGATCCACCTCGAAAAGCATATGAGAATACATGAAAAGGAAGGAAAAGCCAAATTCAACTGCCCACAATGCGACAAAGTGTTCCGAAAGGAGGAGAAACTTAACCGTCACATGAATAAGCATTTACTGAATAACGATGCTATAAAATGCCGAATTTGTACGAAAGAATTTCCGAATACGAGCTATTTGATTCGTCACATGCTAGTGCATCAAAACGATTATAACGAAAATGATACCGAGTCTAGTCTCAATACAACCAGTGCGAGCAATAACACCGATAGCAGTAACGCAACTCCAACCGTTAACAATAATGTTAACGATATCAACTATCTGAGTCACTCGAATAAAAAGTGTGGTATATGTGGCATGACGTGCGCATCGGAAGCAGCTCTGTACAAACATATCGAACGCCACAAAGATAGTCGGCCATTCAAATGTGAAATATGCTTTAAAAAATTTAAAACAGCCGGTTACCTTAAAAAACATCAGCGGCATTTTCATTCAGAGTTTATTGTGGATGATGAAATCATATTGCAGACGAACGAGGATACGATGGATGAAGCGTTTCACGGAGTCGACGATAGATTAAACTTAATCACTAGTAATAGTAGTATTGTATAA
Protein Sequence: MEIDLNLLGPFNPTTTTTVPAVTSTSAIELPVLCRSSGSDTNSEKDRILDENKKIMKIEEICFDDGGGDTGEEKKVYYELKPVEAPHVVYRRIGCYYDDFCIEELISEKTILDYDHYIETSSLDYYSYDENSADEEDSDHHWDEISKWIERDSRGNGFGSSGLRLHKIRYNSSVSNDESADDLPDEPYQCSKCDETFKRSRALYTHLHQVHGHEMNYKCFTCNETFETPNSMISHMKLHKDIKRPYVCNDCGKKFKTFDYLESHRTNKMCNTTQSICAVCGKEFKNQFNLIRHRSVHTNDRPFKCSICGKTFKQQDNLSIHVRCHKTEKPFKCDKCPKRFKDEQYFGRHKKMHDSDFLFHCTVCRKPFRLLIHLEKHMRIHEKEGKAKFNCPQCDKVFRKEEKLNRHMNKHLLNNDAIKCRICTKEFPNTSYLIRHMLVHQNDYNENDTESSLNTTSASNNTDSSNATPTVNNNVNDINYLSHSNKKCGICGMTCASEAALYKHIERHKDSRPFKCEICFKKFKTAGYLKKHQRHFHSEFIVDDEIILQTNEDTMDEAFHGVDDRLNLITSNSSIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01455070;
90% Identity: iTF_01054597; iTF_01052504;
80% Identity: -