Basic Information

Insect: Nephrotoma flavescens
Gene Symbol: -
Assembly: GCA_932525705.1
Location: CAKOBH010002932.1:172266-173876[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.19 35 6.8 0.3 1 12 23 34 23 40 0.81

2 16 0.88 1.6e+02 4.8 0.2 2 23 58 80 57 80 0.87

3 16 7.6e-07 0.00014 23.8 3.7 1 23 87 109 87 109 0.99

4 16 4.7e-05 0.0085 18.2 0.9 1 23 115 138 115 138 0.97

5 16 0.004 0.72 12.1 1.9 1 23 164 187 164 187 0.95

6 16 0.011 2 10.8 0.6 2 23 219 241 218 241 0.96

7 16 5.4e-05 0.0098 18.0 0.2 1 23 247 269 247 269 0.98

8 16 0.0004 0.072 15.3 1.6 1 23 274 296 274 296 0.98

9 16 5.5e-05 0.01 18.0 0.3 2 23 303 324 302 324 0.97

10 16 0.00029 0.053 15.7 5.5 1 23 330 352 330 352 0.98

11 16 2e-07 3.5e-05 25.7 2.1 1 23 358 380 358 380 0.98

12 16 2.3e-06 0.00042 22.3 5.7 1 23 386 408 386 408 0.99

13 16 2.1e-07 3.9e-05 25.6 3.3 1 23 414 436 414 436 0.98

14 16 0.024 4.3 9.7 6.1 1 23 442 464 442 464 0.98

15 16 3.3e-07 6e-05 25.0 2.9 1 23 470 492 470 492 0.99

16 16 7.7e-05 0.014 17.5 5.9 1 23 498 520 498 520 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.19	35	6.8	0.3	1	12	23	34	23	40	0.81
2	16	0.88	1.6e+02	4.8	0.2	2	23	58	80	57	80	0.87
3	16	7.6e-07	0.00014	23.8	3.7	1	23	87	109	87	109	0.99
4	16	4.7e-05	0.0085	18.2	0.9	1	23	115	138	115	138	0.97
5	16	0.004	0.72	12.1	1.9	1	23	164	187	164	187	0.95
6	16	0.011	2	10.8	0.6	2	23	219	241	218	241	0.96
7	16	5.4e-05	0.0098	18.0	0.2	1	23	247	269	247	269	0.98
8	16	0.0004	0.072	15.3	1.6	1	23	274	296	274	296	0.98
9	16	5.5e-05	0.01	18.0	0.3	2	23	303	324	302	324	0.97
10	16	0.00029	0.053	15.7	5.5	1	23	330	352	330	352	0.98
11	16	2e-07	3.5e-05	25.7	2.1	1	23	358	380	358	380	0.98
12	16	2.3e-06	0.00042	22.3	5.7	1	23	386	408	386	408	0.99
13	16	2.1e-07	3.9e-05	25.6	3.3	1	23	414	436	414	436	0.98
14	16	0.024	4.3	9.7	6.1	1	23	442	464	442	464	0.98
15	16	3.3e-07	6e-05	25.0	2.9	1	23	470	492	470	492	0.99
16	16	7.7e-05	0.014	17.5	5.9	1	23	498	520	498	520	0.98

Sequence Information

Coding Sequence: ATGATATCCGATACTATCGACGATAAAAGCTCAATAAATAAGAAAATATGTGAAGAAGCTAAATTATATGAATGTAATTTTTGTAATAAATCGTACGACAAAATATTAAATTTAGAAAACGATGTAAAAAATCATGTCGGTGGCCTTCGACATTTGAGTGCCGCCGAATTTGATTGCATCCAGTGTGGCAGCAGCTTCGACTCAGAGTTAACACTAAAATCGCATGCAATAATAAAACACTCAACTTACTCGAAGCCCTATAAATGTGATAAATGTAATCGGCAATTTAGCAGAAGTGAGGACTTAAATATTCACATGCGGCATCACAGTGGCCTGATCACATTTGAATGTGAACTTTGCAATCGGATATTTGCACAAAATAAGAGTTTGGTCAATCATAGAAACAAATACCATCCAGATATTCTGAATTTTGTAAATAAAATGGATCAAAGCGGTTTAGGCGGACGAGAAATGCATTTCATTCGAAAATACAAGTGTCCTTTATGTGAACTAATATTTGTTAAAATGAGTAGCCTTAAAATCCACTGCAGACGAAATCACGATGGGAAATACGAAATGGCACAATTGGAAGAAATCGAAAAGAACAGTTTAAATTTTAATGGTGAGGTAGCTTGTGTTATTTCGAAGCCACAACAATGTTTTCTATGTCAAGCGAGTCTAACAAATAAGGAAATGTTAAGATATCATCTTAATTCGGTTCATAATGGCACAAAACCTTATAAATGTGCTAAATGTGGCTTAATATTTGCACATGGTTCAGCCCTCGAAAAGCATGTCAATATCCATTTAATAGATATATACGTTTGCAAATATTGCGGGGTAAAATTCCAAAAGATCTATTCGTTATCTAAGCATGTCAAACAACATGAAGGAGCCGTTATACTAAAGTGTGATGTATGTAGTATTCCATATACAAGTCAAAGATATTTGGATAAACACATGCGAATACATTTAGCTGGAAAACCGCATAAATGCCTATACTGTGACAAAAGATTTGCCCAAAGTTGTGATAAAGCTAAGCATATGCGAATTCATACTGGAGAACGACCTTATCAATGTAAAGACTGTGGCAGAGCGTTTTCGCATCTAACAAGTCTGAAGAAACATCAAATCATTCATACGGGCGAGCGCTTATTTCAATGCACGACGTGCGGCAGGTCATTTCAACATAAAAGTAATTTAATTGTACATCATCGCAGTCACACAGGAGAGAGGCCTTTCCAATGTACGATTTGTGATAAATCATTTACCACATCAGGTCACTACACAAATCATTTGAAGATTCATAAAGGTGGAAAAGATTATGAATGTACAACATGCGGTAAACTGTTTCTTCATCACTCGAGTTTCCAAAAACACAAACAAATTCATAGCGGCGAAAAACCTTACAAATGTATGATGTGCGATCGAACATTTTCGCAGCCAGGCCATTTGAAGGAGCACACGCGTACCCATACGGGAGAAAAACCATTTTCCTGTCATATATGTTTAAAACATTTTCGCCGCCGTGACACTCTGAAAATACATATTTCACGACACAATGCTGGAAAATCAAATAAAATGAAAATAATAAATAAACTGCCTGTTTGA
Protein Sequence: MISDTIDDKSSINKKICEEAKLYECNFCNKSYDKILNLENDVKNHVGGLRHLSAAEFDCIQCGSSFDSELTLKSHAIIKHSTYSKPYKCDKCNRQFSRSEDLNIHMRHHSGLITFECELCNRIFAQNKSLVNHRNKYHPDILNFVNKMDQSGLGGREMHFIRKYKCPLCELIFVKMSSLKIHCRRNHDGKYEMAQLEEIEKNSLNFNGEVACVISKPQQCFLCQASLTNKEMLRYHLNSVHNGTKPYKCAKCGLIFAHGSALEKHVNIHLIDIYVCKYCGVKFQKIYSLSKHVKQHEGAVILKCDVCSIPYTSQRYLDKHMRIHLAGKPHKCLYCDKRFAQSCDKAKHMRIHTGERPYQCKDCGRAFSHLTSLKKHQIIHTGERLFQCTTCGRSFQHKSNLIVHHRSHTGERPFQCTICDKSFTTSGHYTNHLKIHKGGKDYECTTCGKLFLHHSSFQKHKQIHSGEKPYKCMMCDRTFSQPGHLKEHTRTHTGEKPFSCHICLKHFRRRDTLKIHISRHNAGKSNKMKIINKLPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01052491;
90% Identity: iTF_01052491;
80% Identity: -