Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.1 3.1e+03 0.0 0.2 15 40 36 58 33 62 0.71

2 10 0.0012 0.9 11.3 1.1 15 40 62 84 53 88 0.86

3 10 0.35 2.7e+02 3.4 0.8 18 38 93 110 85 110 0.76

4 10 0.11 83 5.1 2.0 13 38 116 138 105 143 0.75

5 10 0.0066 5 9.0 2.8 3 40 135 170 133 173 0.84

6 10 0.7 5.3e+02 2.5 2.5 18 27 179 188 172 201 0.86

7 10 0.0013 0.96 11.2 0.6 17 41 206 227 193 229 0.85

8 10 0.21 1.6e+02 4.1 2.5 18 39 242 260 234 264 0.77

9 10 3 2.3e+03 0.4 1.0 17 30 269 282 258 292 0.71

10 10 6.7e-05 0.051 15.3 0.3 15 41 295 318 286 319 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.1	3.1e+03	0.0	0.2	15	40	36	58	33	62	0.71
2	10	0.0012	0.9	11.3	1.1	15	40	62	84	53	88	0.86
3	10	0.35	2.7e+02	3.4	0.8	18	38	93	110	85	110	0.76
4	10	0.11	83	5.1	2.0	13	38	116	138	105	143	0.75
5	10	0.0066	5	9.0	2.8	3	40	135	170	133	173	0.84
6	10	0.7	5.3e+02	2.5	2.5	18	27	179	188	172	201	0.86
7	10	0.0013	0.96	11.2	0.6	17	41	206	227	193	229	0.85
8	10	0.21	1.6e+02	4.1	2.5	18	39	242	260	234	264	0.77
9	10	3	2.3e+03	0.4	1.0	17	30	269	282	258	292	0.71
10	10	6.7e-05	0.051	15.3	0.3	15	41	295	318	286	319	0.84

Coding Sequence: ATGGACGAGAGGGATCCACTCCAAATTGATGACGATATTGAAGTGGTTGTGCCGGTTGATCCGCTTTCGGCCGAAATTAAACCAGTCGATGTGAGTGATTTTATAACACGTGTCGAGTGTAAAGAATGTGGAGTAGGATTTGAGTCGGCCACTGAGCTAGCAGAACATTTAAAATCTCACCAAACGGGGCTCAAATGCGAATATTGCGATCGAATTTTTACACGAAGAACCAATTTATTAGCCCATATACGGGTTCATCTTAACGTTAAACCGTTTAAGTGTAAATATTGTGGCCTAGAATTTCGGAAAACATCGGAGCTCTTGAAACATGAAATTTACCATACCGGGGACACAAGCCTGCAGTGTAAGATTTGTAAGCTAGTCCTCAGCAGCCGCGACCGTCTTAAAAAACATAAATTACGGCATAAATCACGTGAAAAGGATGAATTTAAGTGTGAAATTTGTGGCAAAGATTTTAAGAAAATGAAGAATCTAAAGCTCCATATGAGGCTGCATACCGGAGATAAACCGTTCCACTGTAAAATTTGTGGAAAACGTTTTTCCCACTGTTCCGCATTTACCATTCATCAGCGGACACATACCGGCGAACGGCCGTTCCAGTGTAAAATATGTGCCAAATCATTTCCTCAGAGTTCCAACCTCATTACACACATGAAGAGTCATGCTGAAGCGCTCGGAATTTTGGATAAAGTTAAGATACATCACTGTGAGATTTGTGGTAAATCATTTTCGCATAAACCTCATCTCAGTCGACATATACGGATTCATACAGGAGAGCGGCCATATAAGTGTGATGTCTGCAAGAGGAGCTTTACACAATCTGGATCATTGGCCGAACATATGCGGGTGCATACTGGAGAGAAGCCTTATAAATGTGAATACTGCGGAAAAGATTTTGTGCAATCGAATGGGTTGATCAAACACCTCAAAACCCATGAATCATAA
Protein Sequence: MDERDPLQIDDDIEVVVPVDPLSAEIKPVDVSDFITRVECKECGVGFESATELAEHLKSHQTGLKCEYCDRIFTRRTNLLAHIRVHLNVKPFKCKYCGLEFRKTSELLKHEIYHTGDTSLQCKICKLVLSSRDRLKKHKLRHKSREKDEFKCEICGKDFKKMKNLKLHMRLHTGDKPFHCKICGKRFSHCSAFTIHQRTHTGERPFQCKICAKSFPQSSNLITHMKSHAEALGILDKVKIHHCEICGKSFSHKPHLSRHIRIHTGERPYKCDVCKRSFTQSGSLAEHMRVHTGEKPYKCEYCGKDFVQSNGLIKHLKTHES

Sequence clustering based on sequence similarity using MMseqs2