Nfla030942.1
Basic Information
- Insect
- Nephrotoma flavescens
- Gene Symbol
- -
- Assembly
- GCA_932525705.1
- Location
- CAKOBH010001178.1:411561-413728[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-07 0.00018 22.9 0.1 1 37 15 52 15 56 0.90 2 2 8.6 1.3e+04 -2.3 0.0 24 30 308 314 305 314 0.85
Sequence Information
- Coding Sequence
- ATGGGAAAAATTTATAAAAGAAAAACCGATCGACCAATGACTTCTGAAGAAATAATGAAAGAGGCCTTAAAGGCAATAATTAAGGGTCGAAAAACATATCGTGCCGCAAGTATCGAATACGGGATTAAAAAATCCACTTTATTTAAAAGAATGAAAAAATTTAAGTCAGTTGTAAGTTTGCCAACGGGAAATTCCGACGACGATGGTAACCCCATGGGGCTCATTAACGACGGTAAAACCAAATATAAACATCGTCAAATATTTACTAACGAAGAAGAGTTGCAATTAGTAAATTATTTAGTTAAGTCCTCCCGAATCTGCTACGGTTTGTCATATCATCAAACTAGAAAATTAGCTTATGATTTTGTTACCAATTTAAGAAAACCAACTCCACCTAGCTGGCAAGAAACTAAACTAGCTTCAAAGGACTGGCTAAAGGGATTCATGGCTCGCCATCCGGAACTATCTCTTCGTAAGCCTGAGAACACGAGCTTCTCTAGAGCTACTTCCTTTAACCGTACAAACGTCAAACAGTTTTTCGAAAATTACGCAGCAGTGATGGAAcGAATAACCACCGTTTTACAATGTCCAAAGGTTATTGCGAAAACCGGTACTAAACAAATAGGTCAGATTGTATCAACCAAACGAGGTGAGCTAGTTACATTTTGTGGTATTGTAAGTGCCTCTGGAAATACAATTCCATCAGTATTTATATTTCCACGAGTTCGTTATAAAGATATGTTTTTGCATGGTGCTCCACCAGATAGCTTGGGACTTGGAAACAAAAACGGCTGGATGACTGAAGATCTTTTTTTAGAATTGTTAAAACACCTTAAATCTAATACGCGTTGCTCTTCCCACCACATTGCACTCACCGCGGCTTTTAATAACTTCATGCTCACATCCCCAGGGAAACTTATTACTATTTATGACATTCCGAAATTGGCAAATGAAGCTTTTAAAAATAATTTTACTGTTGCAAACATCAGATCGGCCTTTGAAAAATGTGGGATTTGGCCAGTAAATGCATTTGTTTATACTGAGGACGATTTTGAAATGAATTATGTAACAGATAGACCAATAGCTCAAGACGAAGAGGATTTGAAATTACCACGTAAAGTTGGATTATTTGAAAGCGTTGCTGCAGAATGCCATAATAATACTTCGACAAATATTGTAACACAGTGTACAAATATTGTAAGTGAATCTTTGTTAATTCTAAATCCCAAAATATCCATCAAAGACATAAGGCCATTACCAAAGGCTCCGCCTAAAAGTCGGGTAACAAAACGCCAAGCAGGTAAATCACGTGTGTATACGGATAGTCCGGAAAAGGAACGTGTGGAAAATGTAAAGAGTTTAAAGAAAAACAAAAAGACGACATCAGTAACTCGAAAGCAAGCATCAAAAGTAGCACGAAAAACACAAGTTTTTTCGAATAACAGCAGTAAATCATCGGATGTCGAATCAGACTTTTCTTTGAGAGAATCCTTCGATTCTGATTTTGAAGATGAAAAATTATCTGCAGATGATCAATTTAATGGCTCAAATAATCTGTTGGATAATGTTCATTTTGTGGGCCAAATCAAAGTTGTTCACAATCAAAATGATTTTGACGTGGTATTTTTGGAGAAAACTAATGGAAAATTTGTTTTCCCATATAAAGATGATATATCTCAAATAAATCGGCAAGAGATTCAATCATTATTACCAGAACCCTTTCAAATGCCAGGGACGTCGAGAACAAGAACAAGTTTCATATTTGAAATTATGCTTGACAGATATAGCATCCGTTAA
- Protein Sequence
- MGKIYKRKTDRPMTSEEIMKEALKAIIKGRKTYRAASIEYGIKKSTLFKRMKKFKSVVSLPTGNSDDDGNPMGLINDGKTKYKHRQIFTNEEELQLVNYLVKSSRICYGLSYHQTRKLAYDFVTNLRKPTPPSWQETKLASKDWLKGFMARHPELSLRKPENTSFSRATSFNRTNVKQFFENYAAVMERITTVLQCPKVIAKTGTKQIGQIVSTKRGELVTFCGIVSASGNTIPSVFIFPRVRYKDMFLHGAPPDSLGLGNKNGWMTEDLFLELLKHLKSNTRCSSHHIALTAAFNNFMLTSPGKLITIYDIPKLANEAFKNNFTVANIRSAFEKCGIWPVNAFVYTEDDFEMNYVTDRPIAQDEEDLKLPRKVGLFESVAAECHNNTSTNIVTQCTNIVSESLLILNPKISIKDIRPLPKAPPKSRVTKRQAGKSRVYTDSPEKERVENVKSLKKNKKTTSVTRKQASKVARKTQVFSNNSSKSSDVESDFSLRESFDSDFEDEKLSADDQFNGSNNLLDNVHFVGQIKVVHNQNDFDVVFLEKTNGKFVFPYKDDISQINRQEIQSLLPEPFQMPGTSRTRTSFIFEIMLDRYSIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -