Nfla028820.1
Basic Information
- Insect
- Nephrotoma flavescens
- Gene Symbol
- clz9
- Assembly
- GCA_932525705.1
- Location
- CAKOBH010001054.1:290909-292390[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-09 8.3e-06 27.1 0.0 4 40 20 56 17 61 0.90 2 2 3.5 5.1e+03 -1.0 0.1 30 42 114 126 114 129 0.84
Sequence Information
- Coding Sequence
- ATGCCAACGATTTATAAACGAAAGCCCAACGCAAATCGGGGTTTGTGGTCGAAAAACGACCTAAAAACTGCTATTGAAAATATCAAACACAAAATAATGTCCGTAAATGCAGCTGCAAAGCATTACAAAATACCCTCTACAACATTAAGAAGACATCTTAAAACCCAATGTAACAAAAAACTCTCATTAGGATCTACTTCATGTTTGGGCGACGAAGGTAAATTAAAAATGAAGTTTGACGAATGGCGTACGGGATTGCCGAAAGGTATAAAATCGAACATCCATTTTGCCGTGATAAAAAAAGCTGGGAGGGGATGGTTCGAACTGTTCTTAAAACGCCATCCAACATTGACCATGAGAAAATCAGAAAGAGTTTCGCAAGCTCGTGTACTTGGAATGAGCCATGACGAGGTTAAAGCGTACTTTAATCTATTAGAAAATGTATTGACAGAAAATGATTTGATGGGTACACCTCACAATATCTACAATATGGACGAGACTGGATGCCAATTGAATAATCGTCCAGAGCTAGCAGTCACAGAAAAAGGGTCAAAAAACGTAACAGCAATAACGTCAGCTGAAAAGGGTGAGTCTATCACAGTAATCTCTTGCTGTAATGCCGAGGGAAACTTTTTACCACCGGCGTGTGTTTTTAAAGgtaaaaataaaaaaaagagtttgaggatggcatgcccccaaggtcgcacgtatacatgggtgaaaaactcctctcattgtagcaatgccgaaatgttggagtttgcagcagaaaatgagattgttctactgtacctcccacctcatactactcagtttCTAATGCCGCTGGATAGAGCTTTCTTTAAAGCTTTTAAATCTTATTATTATTCGGCATGCAATTTATTTGTTAGAAACAACCTCACCAGAAAAATAACTCGCCTGCAATTTGGAAAGCTTCTTTCAGATGCGTGGAATGGCTCAGCGACAACGAATAACGGAATATCAGCGTTTGCAGCATGTGGCATATGCCCATTCAATCCGGGTGCTATTCCTAGTTACGCCGTTCTAGAGATATATCGAGAACAGGAGATCCCAAATAATGAAACGACTCCTCCGAAACAAAATGCAAAAGTGGAAGTAAATTCGTTAATCGAAGTCTCCCAAACTACTAATATTACTCCTGGAAAATGTTTGACATTATTTTTCCGATTCGATCTATACCTCTAA
- Protein Sequence
- MPTIYKRKPNANRGLWSKNDLKTAIENIKHKIMSVNAAAKHYKIPSTTLRRHLKTQCNKKLSLGSTSCLGDEGKLKMKFDEWRTGLPKGIKSNIHFAVIKKAGRGWFELFLKRHPTLTMRKSERVSQARVLGMSHDEVKAYFNLLENVLTENDLMGTPHNIYNMDETGCQLNNRPELAVTEKGSKNVTAITSAEKGESITVISCCNAEGNFLPPACVFKGKNKKKSLRMACPQGRTYTWVKNSSHCSNAEMLEFAAENEIVLLYLPPHTTQFLMPLDRAFFKAFKSYYYSACNLFVRNNLTRKITRLQFGKLLSDAWNGSATTNNGISAFAACGICPFNPGAIPSYAVLEIYREQEIPNNETTPPKQNAKVEVNSLIEVSQTTNITPGKCLTLFFRFDLYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -