Nfla061347.1
Basic Information
- Insect
- Nephrotoma flavescens
- Gene Symbol
- cheC
- Assembly
- GCA_932525705.1
- Location
- CAKOBH010007390.1:307837-308431[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8e-10 1.2e-06 29.9 0.0 2 44 10 52 9 53 0.91 2 2 0.88 1.3e+03 0.9 0.0 6 19 130 142 127 143 0.87
Sequence Information
- Coding Sequence
- ATGCCGAAGAAAAACTCATCATTTTTAGAAGAAAATATTCTAAAAGCCTGTGATGCTATTATAAACGGCAAAGTTGCCAAGAAGACTGCATCAAAACTATTTAATGTACCTCGGTCAACATTGCAGTATCGATTATCTGCAAAATTTAAGAAAAGTCGTCCTGGCCCAATAACAATTTTGTCTGAGAATGAAGAACAGACAATAATTGACTGGATATTGGAAAGTGCCAGAAAAGGTTTTCCAAGACATCGCGAAGATGTTGTTGAGACCGTTAAACGCTATTTGGATGATTGTCCAAGAGAACACCCTTTTGGCAACGATAATAGGCCTGGTAAGGGATGGTATAACTTGTTCTTAAAAAGACATCCTAGCATTACCACAAGAACTACAGAGGCGGTAACTGCTGTCAGCTCAAAAGTTAGTGTAGACAATACTTACAAATGGTTTGACCAAATTGATGGCTATTTAAAAGAAAATAAATTGTCTTCAATATTAGCTGATCCATCTAGAACATTTAATGGCGATTAG
- Protein Sequence
- MPKKNSSFLEENILKACDAIINGKVAKKTASKLFNVPRSTLQYRLSAKFKKSRPGPITILSENEEQTIIDWILESARKGFPRHREDVVETVKRYLDDCPREHPFGNDNRPGKGWYNLFLKRHPSITTRTTEAVTAVSSKVSVDNTYKWFDQIDGYLKENKLSSILADPSRTFNGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -