Nfla006244.1
Basic Information
- Insect
- Nephrotoma flavescens
- Gene Symbol
- -
- Assembly
- GCA_932525705.1
- Location
- CAKOBH010000197.1:919086-919427[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-11 6.6e-08 33.9 0.0 5 37 13 45 9 53 0.87
Sequence Information
- Coding Sequence
- ATGAGCAAAGTTAAAGGGAATTATTCCGAGTCAATGCTTCAAAATGCCCTTGAAGCTATAAAGCGGGGCGAAATGTCTAAAAAAGGCGCTGCTAAGCACTTCGGCATTCCCAGAACTACATTGCTATTCCGACTAAGCAATAAATTTACAAAGGTAAGGCCGGGTCCTCTAACTGTTTTAACCTCAGAGAAAAAAAAAGTTATTGAGGAATGGATAATCACGTCGCAGAGGAAAGGATTCCCAAAAAGAAAAGAGGATGTGTTACATGCAGTTAAAGAGTTCTTAGATGAGGAAGTAAGGGATCACCCATTTGGATCTGATAATATACCCGGAGATGGATAG
- Protein Sequence
- MSKVKGNYSESMLQNALEAIKRGEMSKKGAAKHFGIPRTTLLFRLSNKFTKVRPGPLTVLTSEKKKVIEEWIITSQRKGFPKRKEDVLHAVKEFLDEEVRDHPFGSDNIPGDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01051857; iTF_01459445;
- 90% Identity
- iTF_01051857;
- 80% Identity
- -