Nfla015074.2
Basic Information
- Insect
- Nephrotoma flavescens
- Gene Symbol
- bab1
- Assembly
- GCA_932525705.1
- Location
- CAKOBH010000493.1:89565-90845[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-17 4.8e-14 53.5 0.0 1 43 28 71 28 73 0.95 2 2 1.4 2.1e+03 0.2 0.1 21 32 329 340 327 340 0.95
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAACACAAATCAAAATTTAATCCATCACTTGAGGTTTCGTGAGCGGGGACCTTTAAAATCGTGGCGACCCGAAACCATGGCCGAAGCAATATTTAGTGTACTTAAGGAGGGCCTCTCGTTATCGCAAGCAGCACGAAAATATGATATACCGTATCCAACGTTTGTGCTGTACGCGAATCGAGTTCACAATATGTTAGGGCCATCGATCGATGGGGGGACGGATCTGAGGCCGAAAGGTCGCGGGAGGCCTCAGCGAATATTATTGGGGATTTGGCCGGAGGAGCACATAAAAAATGTTATTAAATCGGTTGTGTTTCGTGATGCTAAAGATTTTAAGGATGATCCCGCGATGCAGCTGGCGTACGGACGACATTCGCCTGTATTTCCATTTCAGGACGGAGCCATGAATTATTCCGTGCCATCGGCGCAAAGTCCAATGGGTAACTCAGACTCGTTATCACCGGATGCCGCAACCGCCGCCGCCATATCTGCCATGGCCCATGGGCTTCGGCAACAAATGCAAATGGCCGGTGTACATCCGGATATGGCAAATTTTAGTTTATCGCCTCACTGTGCCGGGCTGAGTCTGCAGCCAAGCGACGATCTAGGACTTAATGCGAAACTGTTAGACCCGAAATTGAATTCACCCGGTGAAATTTTAAGTAATGGTAGTATATCACTTACCCGTATTGAATCACCAATTCGGCATGAGACCAAAAGTTTATCGCCGGAGCAGTCACCAAATCATAAAAATCGGCATGGTTCACCAAGCAGCGAAATTTCAATATCGATAACAGCGCCATCGCGCGCACTAACAAAACCGTCGCGGCTAAAAAATTATCCGCCCACCCAAAATCCATCGCACAACGAACAACCGCCCGAGGAAGATAATTCAATTGATTCCGAACTAGAGATGACCGTAGAGCCGGCTGTAAATATAGCGGTTGGCGTAAGCGGTATGGCTTATAAGGCATCCCGTGAATTTTCATCGCCCCGCTCCACCGAAAATTTACTATTCGGCGACAGTTGTAGCGACGTCGTACTCACTAGTGGTAACAATAATAATAGTAATAATAGTTCGTGTGGTAATTTAAATGATGGTAAATCGTCTCGGTCATCGTCACGGCTGTCGAGTACTTTTAAAGATACATCGGCGGGCATCAAAGTAGAACCAATTGTATCGGAGTGTCGAGGTGATTAG
- Protein Sequence
- MWQKCWNTNQNLIHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPEEHIKNVIKSVVFRDAKDFKDDPAMQLAYGRHSPVFPFQDGAMNYSVPSAQSPMGNSDSLSPDAATAAAISAMAHGLRQQMQMAGVHPDMANFSLSPHCAGLSLQPSDDLGLNAKLLDPKLNSPGEILSNGSISLTRIESPIRHETKSLSPEQSPNHKNRHGSPSSEISISITAPSRALTKPSRLKNYPPTQNPSHNEQPPEEDNSIDSELEMTVEPAVNIAVGVSGMAYKASREFSSPRSTENLLFGDSCSDVVLTSGNNNNSNNSSCGNLNDGKSSRSSSRLSSTFKDTSAGIKVEPIVSECRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458254;
- 90% Identity
- iTF_01459375;
- 80% Identity
- -