Napp025824.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371223.1:362106813-362108543[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.5 7.8e+02 3.0 2.9 1 19 110 128 110 133 0.88 2 9 5.7e-06 0.0013 21.2 0.5 1 21 281 301 281 304 0.95 3 9 0.013 3 10.6 1.5 3 20 317 334 316 335 0.94 4 9 0.00031 0.07 15.7 4.2 2 23 345 366 344 366 0.97 5 9 0.0029 0.65 12.6 0.5 1 23 372 396 372 396 0.96 6 9 0.00017 0.037 16.6 0.2 2 23 403 425 402 425 0.97 7 9 0.0001 0.022 17.3 3.6 1 23 431 454 431 454 0.96 8 9 6e-06 0.0013 21.1 0.3 1 23 460 482 460 482 0.97 9 9 6 1.3e+03 2.2 2.7 5 23 488 507 487 507 0.85
Sequence Information
- Coding Sequence
- ATGAATGAAACTGACCCACTTCTAACCATAGATTTGATTTGCCGTACATGTTTAATGGAATCGAATGAATTGGTGTCGATATTTATGGATGAAGGTGACGATATAACAAAAATGTTGGAATTATGTTCCGGATTAAATATAAAACCACTAGATGGGTTTCCATCGAATATATGCTCGAATTGTCTAAATAAAGTACGCTTATCGTATAAATTTCGAGAGCGGTGTCGAGATTCCCATGAAAAATGGCTTAAAGTTTCAGACACTAATAACGACTTAGAAATTGAAAACGAAAGGAGTATATTCCGGCAAAGAAACGGTTTTGAGATACATAAATGTGAAAAATGTCCCAATCAATATACAATGTTGGTTCTACTACAGGAACATTGTTCGAAGGAGCATCCAGATGAAATTTGCAAAACAGAAGAGAATTTAAAAAATGATATTTGCGAAGAATTGGAACTCAATAAAGCCATAGGTGTGGATGATCTTATAATAGATTGTAATGAGGAAAAATATGAGACAGAGTGCTTAAACTTAAATGAATCGCGCAGAAGTGTGCATGGCGACAAGGAAAATTCGATAATCGATATAGAACATCACGAGGATGAATATCAGTCCGGCAATGAAAATGACCAAAATATTGCAATTGATTTAGTTTTTCCTGATACAGTTGGAAAAAAGCCCCTAACCGATATGGAACATCACGAGAATGAATGCTCGTCTGGAAACGAAAATGACCAAATTATTGCAAGTCATTTAGTTGGTAAGGAAACCACAGAGGAAGATCAATCTGACGGCCGAGCTTTACGTGCTGTCAAAACTGGCATAAATGACAAACAATTTATGTGTGACCATTGTCCGAAGACCTTCTCAGTAATATCTAGTTTGAGAAGACACATGTTACCAGCACATGGTATTTTACTCAAAGCAAACAATTCAACACAATTTTGCGAAATCTGTCAAAGAAAATTCAAGTCAGAAAAAGATCTCCATATTCATAAGACATGTAATCATCCGCCCAATGATGAATGGAAGTGTACATTCTGTAAAGAGACGTTTAAATTGAAGCAAGAGCTAAAGAAACATAAGAAGACACATTTAAATGAATACCCATACGCCTGTACTATATTTGAATGTGGTGCTCGGTTTGCTATTTCCACGGAACTCACACAACATATGCATTATCACACACGTGAGAAAGCCGTTAAATGCAATATATGTGACAAGCAATTGGTATCAGCCAAAGCATTAAATACACACCAAAAAATCGTCCACTTGGTAGAAAAGCCGCATAAATGTACGGAATGTGGTTTTGAATTCTTTCGAAGTGATTTTTTACAACGCCACATGGTTCGCCGGCATGGAGCTGAACGGGCATTTCAATGTTCTAAGTGTGATAAAACTTTTGCTCTGGAATCCGATCTACAAATTCATTTACTGTTACATGCACGGCAAATGAAGAAATGTGACATATGCCGTGATAGTTTTCTTCATCTAGAAAAGCACAAACGAATGGTGCACGGAGATAGATCGCATTCAAAGTGTAATTTATGCGGTAATAAATTTCTCCATATAGCAAAGCACAAACGAATTGTACACGGAATAGATCCGATAGCAGTCGAAAAGTTTAGCAAATGGTTTTTAGCTAAGCTCAGATATTCCAAGCCTTAA
- Protein Sequence
- MNETDPLLTIDLICRTCLMESNELVSIFMDEGDDITKMLELCSGLNIKPLDGFPSNICSNCLNKVRLSYKFRERCRDSHEKWLKVSDTNNDLEIENERSIFRQRNGFEIHKCEKCPNQYTMLVLLQEHCSKEHPDEICKTEENLKNDICEELELNKAIGVDDLIIDCNEEKYETECLNLNESRRSVHGDKENSIIDIEHHEDEYQSGNENDQNIAIDLVFPDTVGKKPLTDMEHHENECSSGNENDQIIASHLVGKETTEEDQSDGRALRAVKTGINDKQFMCDHCPKTFSVISSLRRHMLPAHGILLKANNSTQFCEICQRKFKSEKDLHIHKTCNHPPNDEWKCTFCKETFKLKQELKKHKKTHLNEYPYACTIFECGARFAISTELTQHMHYHTREKAVKCNICDKQLVSAKALNTHQKIVHLVEKPHKCTECGFEFFRSDFLQRHMVRRHGAERAFQCSKCDKTFALESDLQIHLLLHARQMKKCDICRDSFLHLEKHKRMVHGDRSHSKCNLCGNKFLHIAKHKRIVHGIDPIAVEKFSKWFLAKLRYSKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053891;
- 90% Identity
- -
- 80% Identity
- -