Napp026171.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371223.1:366366077-366367873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0021 0.47 13.1 1.6 1 23 202 224 202 224 0.97 2 11 0.14 30 7.4 0.8 1 20 230 249 230 251 0.84 3 11 6.1e-06 0.0014 21.1 1.0 1 23 258 280 258 280 0.98 4 11 0.001 0.23 14.1 5.3 2 23 287 309 286 309 0.94 5 11 0.0016 0.35 13.5 0.1 3 23 314 335 313 335 0.96 6 11 0.47 1e+02 5.7 0.2 1 23 373 396 373 396 0.84 7 11 5.3e-06 0.0012 21.3 1.5 1 23 402 424 402 424 0.97 8 11 0.0006 0.13 14.8 0.4 1 23 443 465 443 465 0.95 9 11 3.6e-05 0.008 18.7 2.3 1 23 471 494 471 494 0.96 10 11 5.9 1.3e+03 2.3 0.2 3 23 504 524 502 524 0.85 11 11 0.0036 0.79 12.4 2.5 1 23 530 553 530 553 0.96
Sequence Information
- Coding Sequence
- ATGAATTCTTGCCAACCAAGTTCTTTGGGGACCAGTACAAACGTTCTAATCAACCCACTCTCGAAAGATTTGGATGATTCCAACATATCAAGAGAAAATCAGCTAATATTCCTTAGCTCTCAAATGTCCCTAAATGATACAATAGAAGGTCTGGTTAAAATGTTAAAATACTACAAGGACCAAGTAAGCGTAATGGAAAGTAAAATTAGAGAACACGAATTGAACAATAGGAAGAGCTTGCCGTTTGATTTAATTCCAAATTTGAGTTTAGCTGCTAAAGAATTTGGTAAAATAATTTTGAGTGATTCGGCGCCAGAATGGCCCTGTGTAAAGTGTATGAAAACAATAAAAAGTCACATTAAATCAATGGAAGTGAACACCAAACCAATGGAGATAATTAATTTAATGGAAGAACCAGTTAATGTTGAATTAGATGAAGGTAGCAAGTTCGTTCCTAATACCCAAAAATCGAGATTAAATGACACCCAACTGCATAAAGATAGTTTGTGCGATTTTGATGAGAATCCGATGGATAATACTGATATGATGAATGAAACGGTCGAATTAATTGACGTTGATTTCCAAACGACAATTCTTGGAAAATATGAATGCGAGAAATGTGATGTTAAAACAGATACTTATAAACAATTAATCCGTCACTTAATCCATCATAGAGATGTCAACATATACGAATGTGAAAGATGTGGTAAAGAGTTTCATTTGGGCCACAGGTATCGCGATCATATGCTTATTTATCAATTGGAAAGACCATTTGTATGCGGAAATTGTGGAAAAGATTTTAAAACTTCAAGATATCTGAGTCGGCATGAATTAACTCATTTAACTGAAAAAGTACTATCTTGTCCAAAATGTGATAAAATGTTTTGTCATAAGAAAGCCTTTCGGGAACACTTCCTAATGCAACACTATAAAAGGATATGCCCCGTATGCAGCGCAACATTTTACAGCAGAGCCCCGTTTAATAAACATATGAATCAAGCCCATGCGTCGGAACACTCAAAAAGGCCACAACAAAAACAAGCAAACGCAGATGGTGGAAAACGAAAAATAAAGCCAAATAGGCCCAGAACCAAACCAAAAAAAAGATTACATAAATATCCTTGTGAAAAATGTGGAAAACTAATGAGTTCCGAAAATGGTTTAAATTTTCATATCAAAAATGTACACGATTTGCAAAGGCCGTTTGCATGCTCATATTGTCCTAAATCGTTTGCCACATCACACTTTTTAGTTGATCATATGCAATCTCACATAAATGAAAAAGATAGTGCTGTTGATTCTGAAACGAGAGAAAAATATTTGCAATATGCATGTGATCAGTGTGATAGATCGTTCACCGCGGCGCGTAAATTAAAGGAGCACAAGATACTTCACTCCGGTATGCGAGAACACAAGTGTGACTTTTGTGATAAATCATTTGCATTAAAACCATATTTAAAGCGACATGTTCGTTTGCTTCATCAAACAAGCCATCCACTAAATGTAATTTGTGGTATATGTAGTAAGGTATCGGTGAGCGGGCCAGCTCATAAATCGCATATGTTATCACATACTGGCGAAACACCATATCATTGTTCGGTTTGTGATGCGAAATTTAGGTATGTAAAATCACTGCGAATTCATGTAAAAAATAAACATAATTGTTAG
- Protein Sequence
- MNSCQPSSLGTSTNVLINPLSKDLDDSNISRENQLIFLSSQMSLNDTIEGLVKMLKYYKDQVSVMESKIREHELNNRKSLPFDLIPNLSLAAKEFGKIILSDSAPEWPCVKCMKTIKSHIKSMEVNTKPMEIINLMEEPVNVELDEGSKFVPNTQKSRLNDTQLHKDSLCDFDENPMDNTDMMNETVELIDVDFQTTILGKYECEKCDVKTDTYKQLIRHLIHHRDVNIYECERCGKEFHLGHRYRDHMLIYQLERPFVCGNCGKDFKTSRYLSRHELTHLTEKVLSCPKCDKMFCHKKAFREHFLMQHYKRICPVCSATFYSRAPFNKHMNQAHASEHSKRPQQKQANADGGKRKIKPNRPRTKPKKRLHKYPCEKCGKLMSSENGLNFHIKNVHDLQRPFACSYCPKSFATSHFLVDHMQSHINEKDSAVDSETREKYLQYACDQCDRSFTAARKLKEHKILHSGMREHKCDFCDKSFALKPYLKRHVRLLHQTSHPLNVICGICSKVSVSGPAHKSHMLSHTGETPYHCSVCDAKFRYVKSLRIHVKNKHNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053851; iTF_01054705;
- 90% Identity
- iTF_01053851; iTF_01054705;
- 80% Identity
- -