Napp011565.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- ZFX
- Assembly
- GCA_947310385.1
- Location
- OX371223.1:170471567-170473132[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.4e-06 0.00053 22.4 4.4 1 23 212 234 212 234 0.99 2 9 0.27 60 6.5 1.6 3 23 238 255 237 255 0.89 3 9 0.00056 0.12 14.9 0.2 1 23 261 283 261 283 0.99 4 9 6.1e-05 0.014 17.9 3.8 1 23 289 311 289 311 0.98 5 9 6.3e-05 0.014 17.9 0.9 2 23 318 339 317 339 0.97 6 9 2e-06 0.00045 22.6 3.9 1 23 345 367 345 367 0.98 7 9 2.5e-05 0.0056 19.1 2.2 1 23 373 395 373 395 0.99 8 9 0.024 5.3 9.8 4.1 1 23 401 423 401 423 0.98 9 9 0.00022 0.048 16.2 4.3 1 23 429 452 429 452 0.97
Sequence Information
- Coding Sequence
- ATGGCGCCGTACTCATTAAAACAAAAAATATTTATCGTAAAACGGTATTATCAGAGCGGTAATTCAACGGAAAAAGTTCAAAAAGAGTTTCCTTTTGAATTTACTCGTAGCAAATCACCTACAGACAGCATGATTAATGAACTAGTGCAATTATTTGAAGAATTTGGTAGTGTATTCAAGTATCACAAGTTTCGATCGAATGATGTTTTAACGGACGGAATAAACGGAATCAAAAATGAAAATGATGGCAATGAATGGAATACATACGAGCATGAAGAAAATTACGTTGAAGTTAAAACAGAGCCAGAAATATTTGCTCATGAATTTACGCCATATCTTGATGTCGACGACGATGATCATCACTTAGATAGTTTAAATGATTATGTGAAAGATGAGTCTAGCACCGACAAATGTTCCTCCGAATCTTCTTCGGATGACAATACTAAAGCAAATGATGATACAGATTGGGTAAACGAAGAGATTGATCGAAAAATACTAGAATCGAATTCCACCATAAATACCGTTAATACATTAGAAAATAACGACGATATGAACAGAAAATTATTGGATGAGATAATACATAGGACAAATAACGAGTTAGAAAAAGCTGAGGAGACAACAAGTAAAACAGGTTTTAAGTGTACCATTTGCAAGAAAGCATTTAATCGAAGACGGACATACACAAAGCACATGAATAGCCATAAAAATTCCTGTGAAATCTGTGGAATTAAATATCGTGATTATGCCAAGCACATGCGGAAGCATACTGGCGAAAAGCCTTATCAATGTGCTGTTTGTAGTGCTCAATTCGCCGATATGAGCAGACTAAATAGTCACATGACAACACATTCAGATGCACGCCCATTTGAATGCGATACATGCAAAAAAACATTTAAATCACGTGATCGTCTACACGGCCACATGAAAATTCACTTAAGTGATCGACCTATCAAATGTGATATATGTGGAAAAGGTTTTCTACATAATGGCGATCTCAAAAAACATAGCCGTGTTCATACAGGAGAAAAGCCTTTTGTATGTAGTTATTGTGGTAAATGTTTTGCATCCAGTCATTCTCTAACGGTACACAATCGAATCCACACGGGAGAGAAACCGTACAAATGCTGCTACTGTGATAAACAATTCAATGTGGCGGGCAGCTTAAATATTCACAAACGAATTCATACGGGGGAAAAACCTTTTAAATGTAAATTTTGTGAAAAAGCATTTTACGATACTGCCACATGTCGGGTACATGAACGAACGCATACGGGAGATTATCCATATAAATGTGTACTGTGTGGTAAGGCACACAATCATCCTAGTAATTTAAAATCACATATGCGTCATGCTCATAGGGAAGATCAAGGATGA
- Protein Sequence
- MAPYSLKQKIFIVKRYYQSGNSTEKVQKEFPFEFTRSKSPTDSMINELVQLFEEFGSVFKYHKFRSNDVLTDGINGIKNENDGNEWNTYEHEENYVEVKTEPEIFAHEFTPYLDVDDDDHHLDSLNDYVKDESSTDKCSSESSSDDNTKANDDTDWVNEEIDRKILESNSTINTVNTLENNDDMNRKLLDEIIHRTNNELEKAEETTSKTGFKCTICKKAFNRRRTYTKHMNSHKNSCEICGIKYRDYAKHMRKHTGEKPYQCAVCSAQFADMSRLNSHMTTHSDARPFECDTCKKTFKSRDRLHGHMKIHLSDRPIKCDICGKGFLHNGDLKKHSRVHTGEKPFVCSYCGKCFASSHSLTVHNRIHTGEKPYKCCYCDKQFNVAGSLNIHKRIHTGEKPFKCKFCEKAFYDTATCRVHERTHTGDYPYKCVLCGKAHNHPSNLKSHMRHAHREDQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458926; iTF_01054668; iTF_01456758; iTF_01455148; iTF_01457845;
- 90% Identity
- -
- 80% Identity
- -