Napp005019.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- PZF1
- Assembly
- GCA_947310385.1
- Location
- OX371223.1:83371346-83372955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.25 13.9 1.4 1 23 146 168 146 168 0.99 2 11 0.0003 0.067 15.7 2.3 1 23 174 196 174 196 0.96 3 11 5.2e-08 1.2e-05 27.6 0.9 1 23 202 224 202 224 0.99 4 11 5.7e-05 0.013 18.0 0.6 2 23 231 252 230 252 0.96 5 11 1.6e-05 0.0035 19.8 2.1 2 23 258 279 258 279 0.97 6 11 0.0015 0.34 13.5 0.3 3 23 297 317 295 317 0.94 7 11 0.0017 0.37 13.4 5.1 2 21 327 346 326 348 0.92 8 11 5.1e-06 0.0011 21.3 3.7 1 23 367 389 367 389 0.97 9 11 0.00013 0.028 16.9 5.3 1 23 395 418 395 418 0.96 10 11 0.0077 1.7 11.3 1.0 2 23 427 448 426 448 0.97 11 11 0.0047 1 12.0 3.1 1 23 454 477 454 477 0.96
Sequence Information
- Coding Sequence
- ATGACAATAGCAAAATATTCCTGTCGTATTTGTTTAAAAAATGTTGGTTTCGTATCTTTGTTTGTCGATGAAGGGGACGGAATTGCCGCTGAAATGATAAGTTCTCTCTTCAATATTAATTTAATCTCTGATGAATATTTGCCAAATAATGTGTGTACCATGTGTTTGGAAAATATAAAATCTGCTTTTCATATAAAAGAAACAATTCTTAATTCAGAGATTGTCCTTAGTACATATTTGGAAGCAAAAAAATCTGCTGTCGCGGAAGAATCAAATAATTTGGAGACCATCGAAGATTCACTCGAAGGGGACAGTTTAGAAGACGAACAGTTAAATTTTGAATGCACAAATGATAGTTCACAAGATTCCCTAGCCAAATTTGCAGAATTTGCGAGTAATAAAGACACTAAAATGTACTTGCGGTTCCCTGAGATGTATGAATGCGATAAATGTAATGCCAAAACTGATACTTATAAAGAACTTCTTAACCATAAGAGAACTCATCCAGATGCAATATTGTATGAATGTGAACATTGTGGCAGATCGTTTAGATTACCCTCACAACATCGTAAACATGTTGCTATTCACCGCGATGCTAGACCATTCAAATGCCCCGAATGTAGTAAGAGTTTTAAGGTATCTTCAAATTTCACAGCGCATATCTTAACTCACAAAAAGGAAAGGCTGTTGCCGTGTCCACGTTGTAATAAAACTTTTCGTTACATGAAAGGATTAAAAACACATCTACTAATCCATAATGAAAGAACTGAAGTATGCAAGATTTGCAATAAATCTTTTAAACACGCAATGTTTTTGAGAATCCACATGGCGCGACATACTCCAAACCAACTTACCTCACCTACTGTGAAGTCCCTATCGTACGTAATTTGCGAGTTTTGTGGTAAACGAGTAAATTCAACAAATCTAAAAAAGCATATAGATGTAAGGCATTTATTAATCCCAGAGAAAAAAGAATGTGCTTGTGCATATTGCGACAAACATTTTCAAACCTCCAGTGCTTTAACTGTCCATATGCAATGCCATTTTAATTCCAGAAAAGTTGCAATGGATGCTAAAACGAAGGAACAACTATTACAACATAAATGTGATGAATGTAACAAAGCATTTACAAGACCACATTTGTTGAGGAATCACAAATTAATTCATTCGGGTGTGAAGGAACACGTTTGTTCATATTGTGAAAAACGGTTTACATTTAAAATGCATCTGAATCAGCATGTTCGATTACTGCACGAAGTAGGTAATCCGAAAAATTCTGTATGTGAGTTTTGCAGTAAAGTGTGCATTAATGCGAAGGCTAGAGAGTCGCATATGCTAACGCATACTGGTGAAACCCCGTTCAAATGTAAATTTTGTAATTCTAAATTCGCATACGCAAAATCACTTCGATTACATGTTAAGAACAAACATAAAACACATTGA
- Protein Sequence
- MTIAKYSCRICLKNVGFVSLFVDEGDGIAAEMISSLFNINLISDEYLPNNVCTMCLENIKSAFHIKETILNSEIVLSTYLEAKKSAVAEESNNLETIEDSLEGDSLEDEQLNFECTNDSSQDSLAKFAEFASNKDTKMYLRFPEMYECDKCNAKTDTYKELLNHKRTHPDAILYECEHCGRSFRLPSQHRKHVAIHRDARPFKCPECSKSFKVSSNFTAHILTHKKERLLPCPRCNKTFRYMKGLKTHLLIHNERTEVCKICNKSFKHAMFLRIHMARHTPNQLTSPTVKSLSYVICEFCGKRVNSTNLKKHIDVRHLLIPEKKECACAYCDKHFQTSSALTVHMQCHFNSRKVAMDAKTKEQLLQHKCDECNKAFTRPHLLRNHKLIHSGVKEHVCSYCEKRFTFKMHLNQHVRLLHEVGNPKNSVCEFCSKVCINAKARESHMLTHTGETPFKCKFCNSKFAYAKSLRLHVKNKHKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053680;
- 90% Identity
- -
- 80% Identity
- -