Napp055064.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371224.1:349124770-349129989[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.021 4.7 10.0 0.2 3 20 58 75 57 77 0.95 2 31 3.2 7.1e+02 3.1 2.4 2 22 120 140 119 142 0.83 3 31 4.6 1e+03 2.6 0.5 1 14 148 161 148 171 0.76 4 31 0.0089 2 11.1 0.4 1 21 177 197 177 198 0.95 5 31 0.63 1.4e+02 5.3 0.5 2 20 211 229 210 231 0.87 6 31 0.0017 0.38 13.4 2.3 1 23 242 264 242 264 0.98 7 31 0.00011 0.025 17.1 0.2 1 23 270 292 270 292 0.98 8 31 0.084 19 8.1 0.6 1 23 351 374 351 374 0.93 9 31 2.2 5e+02 3.6 3.5 1 23 380 402 380 402 0.88 10 31 0.064 14 8.4 7.3 1 23 438 461 438 461 0.95 11 31 0.15 33 7.3 2.6 1 21 467 487 467 489 0.94 12 31 0.084 19 8.1 1.8 1 23 528 551 528 551 0.95 13 31 0.00015 0.034 16.7 1.1 1 23 557 579 557 579 0.96 14 31 0.024 5.4 9.7 4.5 1 23 644 666 644 666 0.95 15 31 0.0011 0.23 14.0 2.7 1 23 702 725 702 725 0.97 16 31 0.57 1.3e+02 5.4 4.0 2 23 771 793 770 793 0.94 17 31 1.2e-05 0.0028 20.1 0.5 1 23 799 821 799 821 0.96 18 31 0.15 33 7.3 3.7 2 23 926 948 925 948 0.96 19 31 0.0023 0.51 13.0 1.3 1 23 954 976 954 976 0.97 20 31 0.00026 0.057 16.0 2.8 1 23 1011 1033 1011 1033 0.97 21 31 0.072 16 8.3 3.3 2 23 1068 1090 1067 1090 0.95 22 31 0.017 3.8 10.2 3.6 1 23 1096 1119 1096 1119 0.93 23 31 0.019 4.3 10.1 4.4 2 23 1180 1202 1179 1202 0.97 24 31 0.0033 0.72 12.5 0.7 1 23 1208 1230 1208 1230 0.94 25 31 0.14 30 7.4 3.9 2 23 1360 1382 1359 1382 0.95 26 31 1.8e-06 0.0004 22.8 1.9 1 23 1388 1410 1388 1410 0.97 27 31 0.03 6.7 9.5 2.7 2 23 1483 1505 1482 1505 0.95 28 31 0.017 3.7 10.3 1.8 1 23 1511 1533 1511 1533 0.97 29 31 0.0022 0.48 13.1 4.0 1 23 1580 1603 1580 1603 0.98 30 31 0.018 3.9 10.2 4.3 1 23 1609 1631 1609 1631 0.96 31 31 0.0092 2 11.1 1.7 1 23 1657 1680 1657 1680 0.98
Sequence Information
- Coding Sequence
- ATGGAAAATAATATAACTAAAGTGAAAGTAAACGAGTATGAAGAATATGTAATATCAATGGTAAATGACTCTGATGAAGGCGAGCTAGTTGTAGGCCATGTAATCGATGATTGGGACACAATGAATAAAACAATTTGCACAGAGGACCAAATGATCGAAGTGAAACATGGTTGCGGCACCTGTGAACAAACCTTCCCTAGGCTAGATGACCTCAATAAGCATAAGTTATTTTGTCCGGTAAACTATGATATACGTCGGGAAGCTTTACAATCTGAAGAACCTCAGTTGCTAAAGAAGAAAGCCCGGTTATGTTTCTGTTGTGAAGAAGAGATCATAGATGCTCACAAAGGGAATATTCAGTGTACAAAATGCGATTTAAAATTTTATACCCATTTTGGCCGGGATCGACATACATACTTGCTTCACGCGGAAGATACGGAATATCAGTGCAATTTGTGTAACGCTGTCTGTCGTACCATACGCATATTCGATTTGCATATGATTGCGCAACATGCCCCCATCAGACCGTTTACTTGCGATTTTTGTGGTCGGAGTTTCTTGCTCAAAAGTAATTTAGCAATGCATTTAAAGCAACCTTTGTGCTCTGGACCTAATAATGAAAAAGCGTTATCTTGTACTGAATGCAAGCAGAAATTTACTAATATCAATGATATATATGAGCATATACATAATGGTGTGGGCCTACCTTCCAAGAAATTAAATTTTCAATGTTCATACTGTGACAAATCGTTTTGTGCATTGCCACTTTTAAGTATGCACAGTCGTTCACATAAAGACGTAAAAATGTTTCCATGTGAGGAATGTGATAAGTCGTATGGTAACATTGGTTTACTTCGAAAGCATCGTCAAATACATACCGTTCAAGGGTCCTTGTTCAAGCATCAAAGATTGCGGCACGTTAATGTTCGTAAGTCACGTCGCCGCATTCGTCCCAGAGGAAGGCCTCGTAAATCAAACAAGATACCTCAAGTCAAAATGCATAAGGATGACATGAACTGGAAACGCGAAATGCTAATCGATGAAGAACCTTATAAATGTACATTTTGCGAAGAAACCTTTAATTCAACACAAGAAAGAGTACAACACGTCATAAGCATCCATACAAATGACTGGCCGCATAAATGCGAAATATGTGATGAGTGTTTTCTTGGAAACGAAGATCATAAAGCGCACATGCTTCAACATATTAATAACCCCGTGGTCTTAGAAACTGTACCGTTACAAAACGAACAAGTGGAATCGAAAACGATTTCAAGTTTAAACCATCGTATTGCTGCGGAAGTAAACAATTATAAATGCCGACATTGCGATAAAAGGTTTAAATTCCCGCAGCAAAGGTTACGACACACTTATAAATTCCACAAGGACGAACACTTTCATACTTGTAAAATTTGTAACAAATCCTATATGTGGGCTGAGGCTTTAGTAAAACACATGAAGTGTCATACTGGCCACCACCCGAATTCAGAAGCTTTTCAGTTTCGAAACAAAATTGAAATAAAGGAAGAACCCCCATTGACCATTGAGCCAGAGAACCAATTAGATTCCGACGAAAGATCTTTCAAATGCCGATTTTGTGAAAAATCCTTTACGTTTATACAGGAAAGAATACGACACGTGATAATGTATCACACTAATGAACGGCCGCATCAATGTGATATTTGTGATAAAATCTTTGTGAACGCCGAGGAACTCAATTTGCACAAGATCCACCATACTGATGAAACCTTAATTATAGATTCTGGGAAAGTACAAAGGGGTGATGAAATAACCGCAACCACAGAGAAAAAATCGCGGCACATTAAGTTTAGCCATACGAATCAAGACATAACTTTTGATGATCTCAAAACACAGGAGAATCCCCATATTGTTGACAAGGAGAGTATTATTATCCCAGATCAAACATCGCATAATTGCTTGTTTTGTGGCAATTGCTATACGCAAGAAGAGGAACTAAGGGCGCACATGATTCACCACATGGGTGGTACGATGAGTATCAATGCTAAGACGAATAATGAAGTAAAGGTTGAATGCGCTGCAACTGGTAAGTCAAACCGTCCTATTCATTCTGGTTCTGAACCTTACAAATGTCCATTTTGCGATAAATCATTTAAGTTCCGGCAGCAAAGATTACAACATGTTAAAATCAGCCACACAGATCAGGGGAGGGATATGAATCATCATATTGGGGACGACATAACTTTAGATGCTAACACATTCCAACTAGAAGATGAACGGTTGCCTAACAGGAAAGGGAAATTATTACATCGAAATAGCTGTGATCCAAACAAGTGCCGTTTTTGTGAAAGATCTTTCAAATTCAGAACACAAAGGTGGCGACATGTAAAATTCAGCCATCCCGATCAATGGCCGCATAAATGCGAAATATGTGGCATAATCTACTCCCGGGCAGGTCAGCTTAAGAAGCACATGGTGCAACATTCGAAGACCGTTGAAGAAGTTGATCCGTTACAAATCGAGGAGGCGACGCTACCGGAATTCAAAGTAATTATTGAATCACATCACAATTCTCCTACTGATAAGGACCTTACAAATGAAAATGAGAAACATTGTCGAAATTTAGATGGTAGAGGTATCGAAATTTTAAAATCTTGGAAGGAGCGACCATACAAAGAGGTCAAACTACCCAAGGCCCAGTGTATAGATTCCAACAAGTTACGAAAAACGATGAACCTGAAAAATAAAATAGCTTTCAATAACGCCAGACCCTACACTTTTATGGAACGGCCTAATAAATGTCGATTTTGCGAAAGATCATTCAAATTTAGGGAGCAAAGATCACGTCATGTTAAAATGAGCCACCCTGATATATATCCTCATAAATGTGAGGTATGCGATGCCAGGTTCTTCAAGCCCCGCAAGCTTGAGGAACACATGATCTACCATGTTAGTGATGGAATGACTGTAAATGCTGATACATTACAAAACGAGAATGAGATTATGGCATGGTGTAGTCCACTACATATGACCCACACAATGAAACAGATGCACAAATGCGTATTTTGTGATAAAAGTTTTTCACAGACCGATGAACTCGATGCACACATGATCCATCATATTGGTGCTACCGAGACTGTCGAGTCTATTGAATTCCAGATGGGACATGTAGCTAAAACTAGCACGTCAACCCTCCCTGCTCATACTGTCCAACAATTACTGAAATGCAGATTTTGCGAAAAATCATTCAAGTTTAGGCAACAAAGACTGCGACACGTTAAAATCAGTCACCCCGATCAACCGCTGCATCAATGCAAAATATGTTTCGCAAGCTTTTTCCGGGCGAGTGGGGTTAAAAGACACATGGTCCACCGTCATGGTAATGATGTAATTTTGCAAGCTTTTGCTATTCGAAGCGAAGATGACATTGAATCACGGGAATATAATGACACCGAGATTTCTAGTGATGTGACGGTACAATATCAGAATGCAATAAAATCGGGTTGCACAATGAGTGTTGATTCATACAGCCCACTTCATAACAACGAAATGCCTAACAAATGCCGTTATTGTGAAAAGTCTTTTAAGTTCAGGCAACAAAGATCGCGACATGTTAAAACTAGTCACCCGAATCAATGGTCGTATAAATGTGAAATATGCCACGCAAGATTTTTTCGGGTAAGTGCGCTAATCGCACACAAAGTCCAACATTCTGGTAATAAAGCAATTTCATATGCTATTAACGTTCAAAACGAATTCCAACGGACGATTGAATCACATCGGGACATTAAAACTGATGAATGCCTTAGAAATGAAACAAGTTTATGTAATAAAGAAAATAGAAACGCGATTATTTATACTGAGCCGTTACAAGAAGTCGAAATACCAATGGAATCTGGAATGAGTTACAAGTCTTTTAGTTCACTTGATATCAGTAATGTGCCGTACAAAAACCGGTATATTAAATTTAATGAAACAATTAAAAGGTCGACCGAATGCTTATTTTCCGATGAAAGTTTTCTCCAGCCCGAGCATAAGGATGATGAAGTCGATTCAGAAAATTCTATCTGCTCCATTCAAACTGGTGAAAAATCCAAGAAATGCAGATTTTGCGATAGATCATTTAAGTTCAGGCAACAAAGATCGCGACACGTTCAAATCAATCACCCAGATCAATGTCAGCATAAATGTGAAATATGCCAAACTAGCTTTTCCCGCGCAGGTGAGCTTAAACGGCATATGCTCTATCATGTAAGCGATGGGGGGGTGACCGTAAATTCTGATACAATACAAAACGACGCTGGCATGACCAAACCACATTTGCAAAATGCTTCAACTTTCGTTGATGAAGATCATGACAACGAGATTATTATTGAAGTATCTCCACAAAACGAGGAAGAAATTAACGCGCAATGCCCTATAAGTAATAAATCACAGAGTCCAGTTGATACCAATGAAATACCTCTCAAATGCCGATTTTGCGAAAGATCATTCAAGTACAGGACACAAAGATGGCGACATGTTAAAATTAGCCATCCTGAGCATTGGCCTCATAAATGTGAAATATGTTACGTAAGCTTTTTCGGGGCGAGGGCGTTTAGAAAGCATATGGTTCGCCACAAAACAAATAGAGTAATTGCAGATGTTAATACGTTACAAAACGAGAATGAGATGATGCTGGATCAGGACAAAATAGAAACGGAATGCACAAAAGATGATCTTAAAATACACAGCACACTTGATACCGTTGAAATAGTTTTCAAATGTCCATATTGCGATAAACCATTTAAGTGCTCGCAGCAAAGGATACGACATATTAAAACGTCTCATATCATTGAGGGGCCGCATAAATGTCAATTTTGCGGCACAAGCTTTTTCCAGGTGGAGAAACTTGAATCGCACATGGTTCACCATATTGGTGCTACCGTGGCTATCGATGCTCAGATATTACAAAAGAATGATCAAGTGCAAACTGTAAGTAAACTACCTTATAAATGTGCATATTGCGATGGGTCGTTTAAGTTCAGAGAACAAAGATCGCGACATGTTAAAAGGATCCACCCCGATCAGCTTAAAGCGCATATGGTTTACCATATTGACGAAAACTAA
- Protein Sequence
- MENNITKVKVNEYEEYVISMVNDSDEGELVVGHVIDDWDTMNKTICTEDQMIEVKHGCGTCEQTFPRLDDLNKHKLFCPVNYDIRREALQSEEPQLLKKKARLCFCCEEEIIDAHKGNIQCTKCDLKFYTHFGRDRHTYLLHAEDTEYQCNLCNAVCRTIRIFDLHMIAQHAPIRPFTCDFCGRSFLLKSNLAMHLKQPLCSGPNNEKALSCTECKQKFTNINDIYEHIHNGVGLPSKKLNFQCSYCDKSFCALPLLSMHSRSHKDVKMFPCEECDKSYGNIGLLRKHRQIHTVQGSLFKHQRLRHVNVRKSRRRIRPRGRPRKSNKIPQVKMHKDDMNWKREMLIDEEPYKCTFCEETFNSTQERVQHVISIHTNDWPHKCEICDECFLGNEDHKAHMLQHINNPVVLETVPLQNEQVESKTISSLNHRIAAEVNNYKCRHCDKRFKFPQQRLRHTYKFHKDEHFHTCKICNKSYMWAEALVKHMKCHTGHHPNSEAFQFRNKIEIKEEPPLTIEPENQLDSDERSFKCRFCEKSFTFIQERIRHVIMYHTNERPHQCDICDKIFVNAEELNLHKIHHTDETLIIDSGKVQRGDEITATTEKKSRHIKFSHTNQDITFDDLKTQENPHIVDKESIIIPDQTSHNCLFCGNCYTQEEELRAHMIHHMGGTMSINAKTNNEVKVECAATGKSNRPIHSGSEPYKCPFCDKSFKFRQQRLQHVKISHTDQGRDMNHHIGDDITLDANTFQLEDERLPNRKGKLLHRNSCDPNKCRFCERSFKFRTQRWRHVKFSHPDQWPHKCEICGIIYSRAGQLKKHMVQHSKTVEEVDPLQIEEATLPEFKVIIESHHNSPTDKDLTNENEKHCRNLDGRGIEILKSWKERPYKEVKLPKAQCIDSNKLRKTMNLKNKIAFNNARPYTFMERPNKCRFCERSFKFREQRSRHVKMSHPDIYPHKCEVCDARFFKPRKLEEHMIYHVSDGMTVNADTLQNENEIMAWCSPLHMTHTMKQMHKCVFCDKSFSQTDELDAHMIHHIGATETVESIEFQMGHVAKTSTSTLPAHTVQQLLKCRFCEKSFKFRQQRLRHVKISHPDQPLHQCKICFASFFRASGVKRHMVHRHGNDVILQAFAIRSEDDIESREYNDTEISSDVTVQYQNAIKSGCTMSVDSYSPLHNNEMPNKCRYCEKSFKFRQQRSRHVKTSHPNQWSYKCEICHARFFRVSALIAHKVQHSGNKAISYAINVQNEFQRTIESHRDIKTDECLRNETSLCNKENRNAIIYTEPLQEVEIPMESGMSYKSFSSLDISNVPYKNRYIKFNETIKRSTECLFSDESFLQPEHKDDEVDSENSICSIQTGEKSKKCRFCDRSFKFRQQRSRHVQINHPDQCQHKCEICQTSFSRAGELKRHMLYHVSDGGVTVNSDTIQNDAGMTKPHLQNASTFVDEDHDNEIIIEVSPQNEEEINAQCPISNKSQSPVDTNEIPLKCRFCERSFKYRTQRWRHVKISHPEHWPHKCEICYVSFFGARAFRKHMVRHKTNRVIADVNTLQNENEMMLDQDKIETECTKDDLKIHSTLDTVEIVFKCPYCDKPFKCSQQRIRHIKTSHIIEGPHKCQFCGTSFFQVEKLESHMVHHIGATVAIDAQILQKNDQVQTVSKLPYKCAYCDGSFKFREQRSRHVKRIHPDQLKAHMVYHIDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053685;
- 90% Identity
- -
- 80% Identity
- -