Napp021125.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371223.1:300865231-300873331[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.002 0.45 13.2 0.7 1 23 203 225 203 225 0.85 2 18 8.4e-06 0.0019 20.6 4.5 1 23 231 253 231 253 0.98 3 18 0.0015 0.33 13.6 6.2 1 23 259 281 259 281 0.98 4 18 1.2e-05 0.0026 20.2 1.0 2 23 287 309 286 309 0.96 5 18 0.78 1.7e+02 5.0 0.1 2 23 334 355 333 355 0.91 6 18 0.00012 0.027 17.0 4.3 1 23 361 383 361 383 0.97 7 18 0.00016 0.036 16.6 3.1 1 23 402 424 402 424 0.94 8 18 1e-05 0.0022 20.4 1.5 1 23 430 453 430 453 0.95 9 18 0.00048 0.11 15.1 0.1 1 23 461 483 461 483 0.97 10 18 0.17 38 7.1 2.7 1 23 543 567 543 567 0.90 11 18 0.00066 0.15 14.7 0.3 1 23 573 595 573 595 0.97 12 18 2.5e-06 0.00055 22.3 6.3 1 23 601 623 601 623 0.99 13 18 0.012 2.8 10.7 7.6 1 23 629 651 629 651 0.98 14 18 0.00085 0.19 14.3 3.8 3 23 658 679 657 679 0.96 15 18 0.11 24 7.7 0.3 2 23 699 720 698 720 0.93 16 18 0.00044 0.098 15.2 6.2 1 23 726 748 726 748 0.97 17 18 5e-05 0.011 18.2 1.8 1 23 767 789 767 789 0.94 18 18 1.1e-05 0.0024 20.3 2.0 1 23 795 818 795 818 0.95
Sequence Information
- Coding Sequence
- ATGGAAATTGAAATCAAGTTAAATTCTTGCCGTGTTTGCTTGAAAAATGTTGGGGTAATTCCATTTTTTAACGATGAGGGCGACGGGATTGCTGCCGAGTTGATAAGTACCCTATTTAATATTTCTGTAGTCTGTTATCCAAATTTACCAGACACATTATGCGTAAGTTGTATGGATAATCTAAAAATTGCTGCCGCTACCAAAGAGACCATTATTAACTCAGAGGATGTTCTGAACTCCGCCATGAAACTGGTCATTGGACCAGTTAAAATGGAATGTAAAGAAGAGTGTGATATCGAGCAGAACAGCAATACAAACTTTCTAGACCCACCACAGTTGAGTGCTTTATATGTGGATCATGTTAACAGTGAAACGTTAAACGACAGTTCCGAGGATTGTATAATTTTATCGACCCCATCGGAGTCTGAATTTGAATTGGATGAGGAATACTTGAGTTGCGAAAGTCCTTTACCACTGCCGATTATTGTGGATTGTTCATTGTCCCTTTTTAATATTTATGATTGCTGGAGAGAGAGCTGCGATTTTAAAACTCATACGTATAAACGGCTACTTCATCATATGGGAACTCACGCAGAAATAAAAATGTATGAATGTGAAGATTGTGGCAAAGAATTTAAAAACAGGGCAAAGCATCGTGAACATGTCGCAGGACACCGACCCGAAAGGCCTTATGAATGCTACTACTGTAACAAAAAATTTAAGCGCAAATTAAATCTTCGCCAACATATTTTTACCCACAACACCGAGCGTATATTTAAATGCCAGCATTGTGAAAAATCATTTCACAACATGAAAGCATTACAACAACATGTATATACTCACCGTGAGAAAAACGTTGTCTGCGAAATATGTCATAAGAAGTTTAACCAATCAGGAAACTTAGGTAGACATCAATTGAAGATCCATGGTATTGGTGTTGAACAAAAGCCAAGCACATTAACCAAAAAGACTTTTCCAGCATCGAACGATGATAAGGTACCATGTGAATTTTGTGGTAAATTATTATCAATCCAAAATTTAAAAAAGCATGTCAAAGCGGTTCATTATAAGGAAAAACCACACAAATGTGCATATTGCGATAAATCATTTTCATCGTCAGCCAGTATAAATAGCCACATGCACTATCACATTAATTCGAAACACGTTTCATTAGATGCTAAAACAACAGATTTATATCTAAAATATAAATGTGATGAATGCGATAAGGGATTTTCAAGTAAAAATTGTTTGAAATTGCATAAGGTTTTGCATTCAGGTGTGAAAGAGCACATATGTCCTCACTGCGGTAAAGAATTCGCATTAAAGGGGTATTTAACGCGTCACGTTAGATTATTGCATAATAGAGCCGATCCAAGAAATTTTGTTTGTAACGTTTGTGGTAAAATTTCAGCCGATATGACCGGATTAAAATCACACATGCTGCAACATACAGGAGAAACCCCATTCCATTGTGAAATTTGTGAATCTAAATTCAGTTTAGAGGATTGTTTAATTTTATCGACCCCATCGGCGCATGCATTTGAATTGGATGAGGAATACTTGAGTTGCGAAATTCCTTTACCACCGCCGGTTATTGTGGATTGTTCATTGTCCCTTTTTAATATTTATGATTGCTGGAGTGAGAGCTGCGATTTTAAAACTAATACGTATAAACGGCTAATTCATCATATGAGAACTCACGCAGAAATAAAAATGTATGAATGTGAAGATTGTGGCAAAGACTTTAAGAAAGGGGCAAAGTATCGTGTGCATGCCGAAAGACACCGACCCGAAAGGCTTTATAAATGCCACTACTGTACCAAAAAATTTAAGCGCCAATTAAATCTTCGCCAACATATTTTAACCCACAACACCGAGCGTATATTTAAATGCCAGCATTGTGAAAAAACATTTCACAACATGAAATCATTATATCAACATGTATATACTCACAGTGAAAAACAGGTTGACTGCGAAATATGCCATAAAACGTTTAAGCATTCAAGATACTTAGGTAATCATCGATTGATGATCCATGGTATTGGTGTTGACCAAAAGCCAAGCACAGTAACCAAAAGGACGTGGAAAAAGGTCCCATGTGAATTTTGTGGTAAAGTATTACACATTACAAGTTTAAAAAAGCATGTCAAAGCGGTTCATTTCAAGGAAAAACCACACAAATGTGCACATTGCGATAAATCATTTTCATCGTTAGCCGGTTTCAATAGCCACATGCACTATCACATTAATTCGAAACACGTTTCATTAGATGCTAAAACAACCGATTTATATCTAAAATATAAATGTGATGAGTGCGATAAGGGATTTTCTAGTAAAACTTTTTTGAAATCGCACAAGGTTTTGCACTCACGTGTGAAAAAGCACGTATGCCCACAGTGCGGAAAAGAATTCGCATTCAAGGTGCATTTAACGCGTCACGTAAAATTATTGCATACTAGAGCCGATTAA
- Protein Sequence
- MEIEIKLNSCRVCLKNVGVIPFFNDEGDGIAAELISTLFNISVVCYPNLPDTLCVSCMDNLKIAAATKETIINSEDVLNSAMKLVIGPVKMECKEECDIEQNSNTNFLDPPQLSALYVDHVNSETLNDSSEDCIILSTPSESEFELDEEYLSCESPLPLPIIVDCSLSLFNIYDCWRESCDFKTHTYKRLLHHMGTHAEIKMYECEDCGKEFKNRAKHREHVAGHRPERPYECYYCNKKFKRKLNLRQHIFTHNTERIFKCQHCEKSFHNMKALQQHVYTHREKNVVCEICHKKFNQSGNLGRHQLKIHGIGVEQKPSTLTKKTFPASNDDKVPCEFCGKLLSIQNLKKHVKAVHYKEKPHKCAYCDKSFSSSASINSHMHYHINSKHVSLDAKTTDLYLKYKCDECDKGFSSKNCLKLHKVLHSGVKEHICPHCGKEFALKGYLTRHVRLLHNRADPRNFVCNVCGKISADMTGLKSHMLQHTGETPFHCEICESKFSLEDCLILSTPSAHAFELDEEYLSCEIPLPPPVIVDCSLSLFNIYDCWSESCDFKTNTYKRLIHHMRTHAEIKMYECEDCGKDFKKGAKYRVHAERHRPERLYKCHYCTKKFKRQLNLRQHILTHNTERIFKCQHCEKTFHNMKSLYQHVYTHSEKQVDCEICHKTFKHSRYLGNHRLMIHGIGVDQKPSTVTKRTWKKVPCEFCGKVLHITSLKKHVKAVHFKEKPHKCAHCDKSFSSLAGFNSHMHYHINSKHVSLDAKTTDLYLKYKCDECDKGFSSKTFLKSHKVLHSRVKKHVCPQCGKEFAFKVHLTRHVKLLHTRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -