Napp056767.2
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- bab1
- Assembly
- GCA_947310385.1
- Location
- OX371225.1:4085760-4087508[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-05 0.019 16.8 0.0 11 41 353 383 351 386 0.85 2 2 0.049 91 5.0 0.0 13 24 416 427 412 429 0.87
Sequence Information
- Coding Sequence
- ATGTTACCGCAACAGTATTGCTTACGATGGAAATATCATCATAGTAATTTACAAACAATGTTTTCACAATTATTGGATCGTGGTTGCTTTTGTGATGTTACATTAGCGTGCGAGGGTCAAACCTTAAAAGCCCATCGTGTAGTTTTGTGTGCATGCAGTACTTATTTTGATTCCATATTGACGAACTGCTGTTCAGAAAAAGATCCGATAATAATAATGCGGGATGCCAAATTTACCGATATCAAATGTTTAATTGAATTCATGTATAAAGGTGAGATCAATGTGGATCATGGAAGTTTGGCTTCCTTATTAAAAACGGCAGAAGAATTAAAAATAAAAGGACTAGCCGAAGTGTCATGGCGAGACGAAGAAAGCCATCACAATCCACAAACGAATTCAACAAAAGAAGATAGCCTTTGTGGCACAAATTCTAGTTTGGATAACATGCCAATCACTGAAACTTTTCTCAAAGATGATAAAAACATTCCAATTTTAACTCCAATAAATACAGCTTTAGGAAAAGATTCACCAAATGTTCAACATAGTCTCCCGATTAAAAAGAAACGTGGGCGCCCGCCATTGGATGCTGATTCTGCTTATGAGTCATATAATAAGTCAATTAAGCTATCAAAACAAAAATCCAATCATGTAACTAGTACATTTACGGATAGCGCAAATTTAGTAACGGTTCTAATGGACGAAAACTCCAAAGATCATAATACAGCAACAAAAAACCATTTATTAACTGAGAACAATAATGTTTCATGGGCAGAACAAAATTTAACCACGCACATGGATTTTGAAGATGATGAGCCTACACCAAATATAATTCCAAAATTGGAACGTCCAGAAACGCCATACGATAGCATTACACATCCTGATGATTTATCATCACCGAGTAGTCCATTAGATACAGGTTCTTCGATATCTCAGCCTGTCTTTCTAACACAGCAAGAAATCGATGAATGGAAAGATGTCATAAAAATGAATGACTATCTGACCAGGGGCCGAAGGCCACAATTTTGGGAAGAACCATTTTGTAAAAGAGTTATGGATGCCATTAAAAATAAAAATCTAGAAATGAAAAAGGCCGCACAAATTTTAGGAGTTTCCTACGGCACATTATATGGACGCTATCGAGAAACATACGGCTGTTTAAAACACCCTTATAGAGGACCATTCATGGTTTCTAGGCTCCGAGAATATTTTACGGATCCAGCACCAACTGAAATTTTAAATTTACTTCAAAAAGGAGGATTATCCCTGCAGCAAGCTGCTGACCTAATGAATTCGTCTACGGTAAAAAATGAATGGCTATCTTATGATGAATCAGAAAAAGATCACATCGACGTAGATATTGATTCAACTGACGATTTGGATCATAAAGATAACGATGAAGATAATAATAAGGAAAACGATAACGAACAAAATAATGAAAATAGTGAGAAACAGGAGAAAAATAGTAAACAGGGACTAATATTACCAAATCATCCCGAAGTAAGTTTAATTAACGTTAAAAAGACTTCCAACAATAATGATATAAAAACGGAGACCAAATCAACGTAA
- Protein Sequence
- MLPQQYCLRWKYHHSNLQTMFSQLLDRGCFCDVTLACEGQTLKAHRVVLCACSTYFDSILTNCCSEKDPIIIMRDAKFTDIKCLIEFMYKGEINVDHGSLASLLKTAEELKIKGLAEVSWRDEESHHNPQTNSTKEDSLCGTNSSLDNMPITETFLKDDKNIPILTPINTALGKDSPNVQHSLPIKKKRGRPPLDADSAYESYNKSIKLSKQKSNHVTSTFTDSANLVTVLMDENSKDHNTATKNHLLTENNNVSWAEQNLTTHMDFEDDEPTPNIIPKLERPETPYDSITHPDDLSSPSSPLDTGSSISQPVFLTQQEIDEWKDVIKMNDYLTRGRRPQFWEEPFCKRVMDAIKNKNLEMKKAAQILGVSYGTLYGRYRETYGCLKHPYRGPFMVSRLREYFTDPAPTEILNLLQKGGLSLQQAADLMNSSTVKNEWLSYDESEKDHIDVDIDSTDDLDHKDNDEDNNKENDNEQNNENSEKQEKNSKQGLILPNHPEVSLINVKKTSNNNDIKTETKST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054446;
- 90% Identity
- iTF_01457496;
- 80% Identity
- iTF_01052241;