Napp048494.2
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371224.1:256781582-256783954[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-08 2.8e-05 25.8 0.0 3 34 11 42 9 47 0.90 2 2 9.4 1.7e+04 -2.3 0.0 21 34 268 281 263 288 0.81
Sequence Information
- Coding Sequence
- atgccgaagaaacgaggaacttatgatgaacaaattcttcaagtagctttgaatgaaataagaaataaacaaatttctaaaaaaaaggcatcattaaagtacaatatacctcgatcaaccctaatttttcgtttagggaaaaagtttcgaaaggttgcacctggcccttcgcctattctaacaacaacaaaggaaaaagctattgccgattggctgatcatgtgtcaaaaaaaggggtttccaaagcgcaaagaggacgttttggatactgtaaaactattcattgacgccgacgtgagaaaaacgccatttaacaataacatgccagatggtctaattatcccgctaatgctgatctatccatacaagagagtacctgaggacattcggaaatcggtaccttctagttgggcgttaggttgctcagataatggatggatgacgaaagaaattttctatgaatatatatcgaaacatttccatccatttctaggtaaaagtaatgtatcgtttccaattatacattttgtcgatggccatagcactcacatgaccttgaaaataagcaagttatgtgttcgtttgggtataataattatatcattatatcccaatgccacaagaatattgcagtcatgtgactatgcagcattcaagcctcttaaaacctgttggtccaaaaatgttttaaaatggcggaaagaaaacccaggcgcatctttaactagagaacattttgctcctttgctacagaaagcatttgatggttgcattacaccagaaattatacaaaatggatttaaagcatgCGGTCTTTATCCGTTCAATTATTCGTCAATATATTTTACTAAAAAATCTGAAATTTGTGATCAAATAACACCAAAATTGATTGATTGTTCTATAACAAGTAAACAATTTAATGAAATTGTCGGACAATCAAAAATAACAACATTTGAAAATATTTTAAAAAATTCATTGAATTTAGGAAATTATGACGAAAATTTCAATATCCTATTCAAACTTTATACGAAACTTAATAATCATATATTGCCGCAAACGCTGGATTCGACGGTACCATGCGAAACAACTCAATGTCAGACGGATGACGGGAACGATATTATTCAAGAAATTAACATTAGTGAAATAGATAGCTTCATATACATTGATGGTGATATATCCAATCTAGTAAATGAGACTATTGGAGCAACAGTAAACATGTCCGGCGTGGTGGAAGATACGAACACCAAATTTCCTGAATCGACCGTTACAAATATTACTAGCCACAATCAAGGAAATACTCAAATAAACTTAATTGAGGAGTATTTAGACTGGCCTGAAACGCCTGTTAAAACTGGAAACCAAACCGCTAAATCTACTATTAAACCTAAAAAACCATTTATTTTAACATCTCCATTATTTATACAAGCAGAACGGCAGCGACAAATGGAGAAGCAAAAACTGGATCACGAAAAGGAAGCTCATAAAGCAGCGAAGATTGAAAAACAACGTATAAAACAACAACAAACCCAATTGAAAGCTTTAAAGAAGCAACACAATCAAATTAAAAAAAAAGTCTGGGAAACTAAAGCCACAAACGACAGAAATAAAATATTGCCTGAACGAAATAATGAAAATCAGCATTTTCAAGTCAACAGTGGGCTTAGTACCAGTACAGGTAATAATGAGTCACTTGCCATTAATGAAGTTAATAATAATAGTCAAGCAATAAATACGGAAGTTGATATTATAGATACATCGTTCCTTGAATCGTTACCTGTAGACATCGGAAACATTATAATAGCCAAAGGTAAAATGTGCTATCATTGTACATTTTCATTCAGCATGACATCCCATAACTTAAAAAAACGTGGGGATAAAATGCGCCAAATGTTTGAGGGAGTACCACATAAAATGTGTCAAATTGTTAGGATTGGCAATGATGCCATTGTTTTTATGTTCCAAGTGCAATTTAGAATTACAAACGGCTTAAGCTAA
- Protein Sequence
- MPKKRGTYDEQILQVALNEIRNKQISKKKASLKYNIPRSTLIFRLGKKFRKVAPGPSPILTTTKEKAIADWLIMCQKKGFPKRKEDVLDTVKLFIDADVRKTPFNNNMPDGLIIPLMLIYPYKRVPEDIRKSVPSSWALGCSDNGWMTKEIFYEYISKHFHPFLGKSNVSFPIIHFVDGHSTHMTLKISKLCVRLGIIIISLYPNATRILQSCDYAAFKPLKTCWSKNVLKWRKENPGASLTREHFAPLLQKAFDGCITPEIIQNGFKACGLYPFNYSSIYFTKKSEICDQITPKLIDCSITSKQFNEIVGQSKITTFENILKNSLNLGNYDENFNILFKLYTKLNNHILPQTLDSTVPCETTQCQTDDGNDIIQEINISEIDSFIYIDGDISNLVNETIGATVNMSGVVEDTNTKFPESTVTNITSHNQGNTQINLIEEYLDWPETPVKTGNQTAKSTIKPKKPFILTSPLFIQAERQRQMEKQKLDHEKEAHKAAKIEKQRIKQQQTQLKALKKQHNQIKKKVWETKATNDRNKILPERNNENQHFQVNSGLSTSTGNNESLAINEVNNNSQAINTEVDIIDTSFLESLPVDIGNIIIAKGKMCYHCTFSFSMTSHNLKKRGDKMRQMFEGVPHKMCQIVRIGNDAIVFMFQVQFRITNGLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -