Napp002894.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- bab2
- Assembly
- GCA_947310385.1
- Location
- OX371223.1:51703181-51724940[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-12 1.6e-08 36.2 0.0 2 45 415 458 414 458 0.92 2 2 0.63 1.2e+03 1.4 0.6 4 20 547 562 546 562 0.91
Sequence Information
- Coding Sequence
- ATGAGTTGCAGCGAAGGGCAAACGTACTGCCTCCGATGGAACAATCACAAATCAAATTTGGTCGAGATACTCGACGCACTGATCAAAATGGAATCGTACGTTGATTGTACGATATATGTTGATGATCATGTACAATTTAAAGCGCATCGTGTCGTACTCGCAGCTAATTCACCATATTTTCAAACCATACTGCAGGGTGTACCGATGGATCACTGTACGATACTGTTTCCCGAGGTGCAGGCATTTGAAATGCGTGCCCTCCTCGAATACATGTATACGGGCGAGGTGAATGTAACACAATCACAGATACCCAGAATTATGAAAATAGCACGTGATTTAGAAGTTAAAGGACTATACGATATGGCCGATTTAAAAGACTTGAAAGATGAACCTCAACATTTTAGTGGAATTAAATCTTCACCGACTAATAATAGCATAAATAATAACAACAACAGTAGTAATAGTAATAATAATAATAATAACAACAACAGTAATAATCATCATAATAATAGTAATAATTCGTCAACATCATCCACAACTCATTCCACTAGTAATAACAATAATAGTAACATTAACAGTAGTAATAATAGTAATCATCACACAAATAGCAACAACACTACACCGAATCATCATCAGCATCATCAATCTTCGCCGGTCATATCCACCTCGACAAATATTACACAGGCCCAAAGTAGTTCATCATCACCGCCATATAGTTATAAATCGCCGTACTCGAGCCTGTATTCACGATCACCAGTCCAAACCGGCACCTCCGATCGTTTACCACAATGGCCACATTTACCACCCACCTTGCCTGCCCAACATTTGCACAATGCCGCCGCCATGCTTTCGTCCGTTTACGATTCGGGTTCGGATATGAATCCGCTAAAACGGAAAAAATTATCGTCCATTTCAAGCATGCTAATGTCACGTGACACACCAATTTTACGGAATGTGCTAGCGCAGCCGAATGTTGCCGATTCGTCACAGCCAGTGCCACTTGTTTGCCAGCCATCGTTGGTGGTGGATGCGGATCGGGGTGAACGACACAATTCGCATTCGAATGGAACTGATTATTCGGATAAGAAAGTTAAGTACGAGGAGCCACATTCACCATACACAGATAAATCGTTTGAGGATGATTCAATGGATCCGGGACAATCATTTAGTGGATCCGATTCGAGAATAGCGTCGTATGTGCCACAACAGAAACCCGAATGGAAACGTTACAAGCAATACACACGGAATGACATCTTATCGGCGATCGACTGTGTCCGGAATGGCATGTCTGCGTTACAGGCGTCCCGCAAATTTGGTGTACCCTCCCGCACCCTATACGATAAAGTGAAAAAATTGGGTATTACAACGGGGCGACCGATGAACAGGAGTATGAAACGCAGTCCAAGTCATGGCCATGGAAATAGTCAGGCTGGATTCCCGTACGGTTTGACCGGCACAAATAGTCCATTTGGCCACCATCAACTTGAAAATCCGTCACAGTCGAACGATAATGATCGGGATCATTTACCGCCGACGATACCACATCCTGCCGCCGCCCTCCTAGACGCGACTTTTTTACAGCAGGCCTTAGAAGCACGTGGTGGTGATATTGCGGGCCGTGAAGCATTACATGCGATGGCATTCGCGGCCGCCGCACATGCCGCTGTAAATGGTATATCGACGAGTCCTGGCACCCATGGTACAGCACGATCACCAAGTCCCGGCATCCTAATGAAATATGTTCGACCATCGACACCGTCACCAATGGCGTCCCATCATCAGCATCACAGCGATATGATGATGAAAGATGTGGACGATGATCATGTCGAGGATTTATCAATGTCGAAAAAAGATTCATCGGATCGTTCAACGTCATCACCGCAATCGCAACATAGTGTGGCGAGTCCGCCATTATCGCCACCCCAATTGCCACCATCACTGCCGAGTCAAATGCATGTGCACCAACAATTAGGGGTTATAGTTCCACCAATGACTAAGGTATCCACCCCTAAGGATGACTACGGCTGCAATGATGTGAAAAGGGAAATTTTAACCACCGAAGAAGATTCGAGAGATTAA
- Protein Sequence
- MSCSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIYVDDHVQFKAHRVVLAANSPYFQTILQGVPMDHCTILFPEVQAFEMRALLEYMYTGEVNVTQSQIPRIMKIARDLEVKGLYDMADLKDLKDEPQHFSGIKSSPTNNSINNNNNSSNSNNNNNNNNSNNHHNNSNNSSTSSTTHSTSNNNNSNINSSNNSNHHTNSNNTTPNHHQHHQSSPVISTSTNITQAQSSSSSPPYSYKSPYSSLYSRSPVQTGTSDRLPQWPHLPPTLPAQHLHNAAAMLSSVYDSGSDMNPLKRKKLSSISSMLMSRDTPILRNVLAQPNVADSSQPVPLVCQPSLVVDADRGERHNSHSNGTDYSDKKVKYEEPHSPYTDKSFEDDSMDPGQSFSGSDSRIASYVPQQKPEWKRYKQYTRNDILSAIDCVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRSMKRSPSHGHGNSQAGFPYGLTGTNSPFGHHQLENPSQSNDNDRDHLPPTIPHPAAALLDATFLQQALEARGGDIAGREALHAMAFAAAAHAAVNGISTSPGTHGTARSPSPGILMKYVRPSTPSPMASHHQHHSDMMMKDVDDDHVEDLSMSKKDSSDRSTSSPQSQHSVASPPLSPPQLPPSLPSQMHVHQQLGVIVPPMTKVSTPKDDYGCNDVKREILTTEEDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01454973;
- 90% Identity
- iTF_01456157;
- 80% Identity
- iTF_01052253;