Napp067897.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371225.1:158578764-158579846[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-11 1.3e-07 33.3 0.0 5 38 219 252 217 256 0.93 2 2 5.5e-09 1e-05 27.2 0.1 7 39 310 341 306 345 0.86
Sequence Information
- Coding Sequence
- ATGAGAAATTTTAAATCATTGGATTATAATCAGTATTTATTTCAATTTATATGTGAAAATAGTAATTACGATGTAAAAATAATACCAAACGATTCGACGGCGATTATTCAAGCTCACAAAATTATATTGGCGTCGGCAAGTGATTATTTCCATAACATATTTAAAGATCTTCCCAGCTCCGATGATGAAATATTCATTCATGTACCAGATTTTAATTATCGTTCTGTTAATTTAATAGTAAATTTTATATACATGGGCGAAATCGAAGTTAGTACAAATGAATTAAATACATTTCTGGATTTATGCAATTTATTTTCGTTAAAAAGCTTTGATCGTCTCATTGCCAACGATGAAATGAGCTATAGTGGAATAATGCTTCCTACTACAACAAATGACCAATATTATGAAAACTATAAAATTATTAAAACGGAGTATGAAGATGATATTTCGGAGTCACTGGAGCTCTCCGATTGCAACGAAAATACTAGTAATATTAGTACGCAAATGCCCATTGGAGAAGATATCGCAGACATAAAAATTGAAGAGAAACCAATCAGGGACAATTCTCTAAAGTACCCCAAACCTAAACCACCATTAAATTTGCAGAAAAGATTATGCGACTTACCATTAGAATTACGAAATAAATATAAACATCTCAATGAAGCTCTAAATTCTATTATTACGGACGGTATGAGCTACAAGAAAGCTGCAAAAATATACAAAATTTCATCTACAGTACTTTGGCGACGCGTTAAAATTTTAAAGCAAGCCCGACGAGCAATGGCAAATACAAAGAAAAAGTTAAAACCAATTTCGCCTAAAATGGAAAACCGGGAAAAAACTGATGATGTTGATGATAATGTTCCACTTATAAATTTGTATCGTTTAAAAAGGAATTTGAGTACGGATATGAATCCACATATGCACGAAGCCTATCTCGCCTATAAAAATGGTATGCTACAAACTCGAGCGGCAGCGCTATATAACATACCTAAAACTACATTTTGGCGTTATGTAAAACGCATGGCCATTGAGGAAGGCCATATTACGTCCAGTACGACAATAGCGAATAATGGAACCTAA
- Protein Sequence
- MRNFKSLDYNQYLFQFICENSNYDVKIIPNDSTAIIQAHKIILASASDYFHNIFKDLPSSDDEIFIHVPDFNYRSVNLIVNFIYMGEIEVSTNELNTFLDLCNLFSLKSFDRLIANDEMSYSGIMLPTTTNDQYYENYKIIKTEYEDDISESLELSDCNENTSNISTQMPIGEDIADIKIEEKPIRDNSLKYPKPKPPLNLQKRLCDLPLELRNKYKHLNEALNSIITDGMSYKKAAKIYKISSTVLWRRVKILKQARRAMANTKKKLKPISPKMENREKTDDVDDNVPLINLYRLKRNLSTDMNPHMHEAYLAYKNGMLQTRAAALYNIPKTTFWRYVKRMAIEEGHITSSTTIANNGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053529;
- 90% Identity
- iTF_01053529;
- 80% Identity
- iTF_01052297;