Napp067896.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- -
- Assembly
- GCA_947310385.1
- Location
- OX371225.1:158575656-158576174[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-08 2e-05 26.3 0.1 12 42 5 34 2 37 0.85 2 3 8.4e-06 0.016 17.0 0.0 7 38 46 77 40 81 0.93 3 3 2.7e-09 4.9e-06 28.3 0.1 2 39 100 136 99 141 0.90
Sequence Information
- Coding Sequence
- ATGAATTCAATTATTAGAAATGGCATGAGCTATAAAAAAGCTGCTAAACTCTATAATATTCCTGCAACAATACTTTGGAGAAATGCAAGAAGTTCCATGCACGAAGAACGAATAATAACAAATACAAATAAGTACAAAGCCATACAAGAACTACAAAATGGAAACTTAAGCCTAAGAGATTTATATAAAAAGTATAAAGTTTCTATTTCCACTCTGTATCGTGCAAAAAAGAAATTATGTATGGAGGGGAAACTGCCGTTAGACTGTTTATCACAAAATCGTTTCCGGTCGACAACACAGGAGCATATTAATCAGGCATATGAAGCTTACAAAAATGGCATGTTACAAACTCGGGCTGCAGCATTATTTAACATACCTAAGACTACATTTTCACGATATGTAAAACGCATGGCTTTGGAGAACCCAAATGATTCCAAAACGGGTAACGAAAATGTTGTATTTGATGTGAATTGTGATTCAACAGATTCAGAAAATTATAAAGAGCTGTTAGGTTTATAA
- Protein Sequence
- MNSIIRNGMSYKKAAKLYNIPATILWRNARSSMHEERIITNTNKYKAIQELQNGNLSLRDLYKKYKVSISTLYRAKKKLCMEGKLPLDCLSQNRFRSTTQEHINQAYEAYKNGMLQTRAAALFNIPKTTFSRYVKRMALENPNDSKTGNENVVFDVNCDSTDSENYKELLGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -