Nscu014826.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- THAP1_1
- Assembly
- GCA_947095585.1
- Location
- OX352764.1:9738612-9741187[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00026 0.043 15.4 2.1 1 23 475 498 475 498 0.96 2 10 1.7 2.8e+02 3.4 0.5 1 23 525 548 525 548 0.96 3 10 0.0015 0.25 13.0 0.7 2 21 561 580 560 581 0.94 4 10 2.6 4.4e+02 2.8 1.4 1 19 599 618 599 621 0.85 5 10 8.6e-05 0.014 16.9 5.0 1 23 635 657 635 657 0.97 6 10 0.5 83 5.1 0.1 2 20 666 684 665 686 0.92 7 10 8.6 1.4e+03 1.2 0.8 3 19 703 719 701 728 0.57 8 10 1.1e-05 0.0018 19.7 2.0 1 23 732 754 732 754 0.98 9 10 4.9e-05 0.008 17.7 2.5 1 23 760 783 760 783 0.96 10 10 4.7 7.7e+02 2.0 0.4 1 16 789 804 789 806 0.80
Sequence Information
- Coding Sequence
- ATGCCGGCTTTCTGCGCCGTTTTAGATTGCTGTGATAAATATGGACACGGTGAGAGTATCTCATTCCACAAATTTCCATTAAAGCGCAGAGATCTTCTGGATAAATGGATTGATTTCACACAACGAGGCCCAGAGTGGAAGCCGTCCAAGTGGAGCGCTATATGCAGCCATCACTTTGTTCCTGAAGATTTTGGAAATGTAAATGCGCGAAAGACTCTCAAGAAGACAGCAGTGCCAAGGTTGACTGTTGCGGCGTTGGAAACATCTGCTGTAACGACTCTACGTCCGACGATAAGTAGACAACTCGGTCCAAAATTAAATGTACCTATTGAAGCCGATGTTGATGTAGGGGATGAGTTAGCAGAACCATTGCTTACATCCTCTTATCTGCCGATAACAAATTGTCGGCTTTGTGGTATTTGCTGCCGTCCTGTGGCGACTTTTGCAACAAATTTTGAAATCTTCGGAATGATCCAAAAGTGTTTTCCTACACTTAACATACAACAGGATGATAATCTGCCGAAAAACATGTGCACAGGCTGCCTCAAGTGTCTTACAAGTTTTTCCGAATTCATTGACAAAGTTTTTGAAACGCAACGTGAACTTCAGAAGAGTTTTCGCAATGAAAAAACAGCTAAACCACCAGAACGCCCGGTAAAGATCAAACAGGAGCCGGTGGTTAAAGTAAAGCAGGAGGTATCTGAGGGTATGGACAGTTTTCTGTCCGATGAACTGGACATGGCTATTGACGATTGTGATCAGGACCCTTGTGAGCAGAAGTTTCCCTTCTTTTCGGATTTTCCAATGCTCAACGCGCAGGATATAATTGATAATTGTGATATTATGGAAATAGTCAATTTGGATGATGCGTTTATTGATATACCCGATGATGATGGAATAACTGCTGCTGCAAAGGAAATTATGGAACAACCGAAAGAGTTTTATGCAAGTGTTCATCAAGAACTGCAAATGCATCTTTTGATGGATGAGCACAATTACGCCTCTCCAATGGACGAAACCAAAGACACCCTAAACATGAATAATTTCTATAAAACCGAAAAGACTGAAGTGCGCGATGAGGAAAATGAGGTTGTTGGAGGTGCGCAAGAGATACTCCAGATGACAACAGTTGCTGCGCCTACAACCTACAGCCAAACAATTACTACTGCTTTGCCAAAACTAACAGCATCCGAACGAAATACAAAACCAATTGTCACGTCTGTAAGTGCAATCGCAGAATCGAGATCACAGATTCCACACGAAAATGGAACGGGGAAACTTGTCGTAACATCAATCAGTGATCTGTTGCCCGCAGCTAAAGATTTTCAAACTACGCGAACTTCAGCAAATCCGCCGAGTCATAAACCGAATATTGTTGTGCTCAATGAAAGTATTGTTAAAACAGCTTCAGCTTTCCAGTTGCACTCTTGCACCATGTGCAATTTGCAATTTTTCTCACAAGATTCTCTTAATAATCATATCAACATTACACATACGTTGGCTGTTCCAATGGTTAGTCTACCGTGGACTAATTTTTCAAGTAGCTCAACGGTGATCAATTCGAGTCTTAGGTTTTCTTGTCAATCGTGCTCTGGAATTTTCAATTCAATCTACGCCATGTTACAGCACAAACAAAGGATCCATCCATGTGCCACCAACATAAAACGAACATTTTTCTTATCCTGTCCGAGATGCGAGAAGTTCTTTGTCAGCAAAGTGGCATTTAACAATCACATAAAGCACATTTGCCTGCCAATGTGCAGCCGGTCGCAGCTGACGACGAGATCGACACACTTTAAATGTCGTCACTGTCAAATTGCCCTCTTCAACCACTGGCGTCTACTAAGAAATCATGAAACTAATTGCAAAAGACGCCCCAAACAGCCTTCTCTACCATTACAGCACAAATGCAAACTCTGCGATCGCGTCTTTTCACAGAAAAAAAGTCTAGCACACCACGAATCCTCTCATCGGCCAATTAATCAATGGAATCTTGTCTGCACCCAGTGTAATGGTAAATTTGATTTTGTTGCAGATCTAAGTCGTCATTACTCCCAACCGAATGGCTCGTGCAAAATTAACGCCGATACTGACGTTTCGGTGGTGTGTCGCGTATGCAATAAACTCATCGATTCCCTGCAGAAGTTACGGTCGCATGGTCATTTGCGCAGACATTCTAAAAGGGCAGCCTCCTATCCATGTCCGAATTGTACAAAAGTCTTCCATACCTCGAATAATCTCAGCCAGCATCGCATTACACACATCCAGGAGAAACGGCACAAGTGCGAACTGTGTACCCGAATATTTAAACGTCGTGGTGGACTGACGCAGCATATGAAAGGATTTCATCTGAAAGTAAAACCCCACGAATGTCTCACATGCAAGCGGTGCTATGCACTTAAAGCTGATATGATGCGTTGTCGCCACTCTCTCTTGAAGGGATTGTGA
- Protein Sequence
- MPAFCAVLDCCDKYGHGESISFHKFPLKRRDLLDKWIDFTQRGPEWKPSKWSAICSHHFVPEDFGNVNARKTLKKTAVPRLTVAALETSAVTTLRPTISRQLGPKLNVPIEADVDVGDELAEPLLTSSYLPITNCRLCGICCRPVATFATNFEIFGMIQKCFPTLNIQQDDNLPKNMCTGCLKCLTSFSEFIDKVFETQRELQKSFRNEKTAKPPERPVKIKQEPVVKVKQEVSEGMDSFLSDELDMAIDDCDQDPCEQKFPFFSDFPMLNAQDIIDNCDIMEIVNLDDAFIDIPDDDGITAAAKEIMEQPKEFYASVHQELQMHLLMDEHNYASPMDETKDTLNMNNFYKTEKTEVRDEENEVVGGAQEILQMTTVAAPTTYSQTITTALPKLTASERNTKPIVTSVSAIAESRSQIPHENGTGKLVVTSISDLLPAAKDFQTTRTSANPPSHKPNIVVLNESIVKTASAFQLHSCTMCNLQFFSQDSLNNHINITHTLAVPMVSLPWTNFSSSSTVINSSLRFSCQSCSGIFNSIYAMLQHKQRIHPCATNIKRTFFLSCPRCEKFFVSKVAFNNHIKHICLPMCSRSQLTTRSTHFKCRHCQIALFNHWRLLRNHETNCKRRPKQPSLPLQHKCKLCDRVFSQKKSLAHHESSHRPINQWNLVCTQCNGKFDFVADLSRHYSQPNGSCKINADTDVSVVCRVCNKLIDSLQKLRSHGHLRRHSKRAASYPCPNCTKVFHTSNNLSQHRITHIQEKRHKCELCTRIFKRRGGLTQHMKGFHLKVKPHECLTCKRCYALKADMMRCRHSLLKGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -