Nscu006041.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- L
- Assembly
- GCA_947095585.1
- Location
- OX352762.1:17005846-17033421[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.7e-06 0.00094 20.6 1.7 1 23 265 287 265 287 0.98 2 18 0.48 78 5.2 5.8 1 23 293 315 293 315 0.98 3 18 2.5e-07 4.1e-05 24.9 3.1 1 23 321 343 321 343 0.99 4 18 1.1e-05 0.0019 19.7 0.3 1 23 349 371 349 371 0.98 5 18 1.8 3e+02 3.3 0.1 2 23 434 457 433 457 0.83 6 18 0.0019 0.31 12.7 0.6 2 23 481 503 480 503 0.96 7 18 0.03 4.9 8.9 0.7 1 23 611 633 611 633 0.97 8 18 0.0014 0.22 13.2 0.9 2 23 643 664 642 664 0.96 9 18 0.00096 0.16 13.6 0.2 1 23 672 697 672 697 0.89 10 18 1.2 2e+02 3.9 0.4 1 19 702 720 702 722 0.95 11 18 0.17 27 6.6 1.1 1 23 732 755 732 755 0.97 12 18 0.0022 0.35 12.5 2.6 1 23 805 827 805 828 0.96 13 18 0.0011 0.18 13.5 4.6 2 23 1028 1050 1027 1050 0.96 14 18 0.13 21 7.0 0.1 1 23 1056 1078 1056 1078 0.92 15 18 0.0087 1.4 10.6 2.7 2 23 1086 1107 1085 1108 0.95 16 18 0.28 47 5.9 0.5 2 23 1202 1223 1202 1223 0.94 17 18 0.021 3.5 9.4 0.0 1 23 1233 1255 1233 1255 0.96 18 18 0.057 9.4 8.1 1.7 1 23 1262 1284 1262 1284 0.93
Sequence Information
- Coding Sequence
- ATGGCTCTAAAAATGTTATATCGCGGACCAAGCTCAAGACTGGAAAATCTAATTGAAAAGATTCAAGCGACCAAGGAGGTAGTTAATTCAGATCTTTACTCGACACACACATCCTCCAGTTATTCGCCGTCAATATCAGATGGTACAATTACGCCTAACTCCCTGCATCATCAACTCCATCACCACAATCACCACAACCAACACCACCACCATCATAATCATCACCAGCACCAGCAGCATCATCTTTCACACCAACTACATTTGCAGCAGCTTCACGCTCACCAGCAGCAGCCACATTGTCGCTATGATTCCGAGGAAGGTAATCATCATCATCATCATCCGCAGCAGCAGCAACGCGTCAGAAATCACAATCGACTGGTAAGTGGCGCTGCCATAAATGGTGCGGCGGTTAGTGGTGGTGACGATGATGACGACAATGACGATGACGAACAGAATGAAGCCGTCGACGCCGCCGATTCTGGCGAGGAAAGGATTTCCCAATCGAAAACCACCACCAACACCACCGGGGGAGCTGTAGCTGTTCTGGCAGTCCAGAGAGGAGATGACGGCGATGATGATGATGATGATGATAATGGTGATGATGAGGGGGAGGGACGTCATCGTCATAGTGGCGGCGCGTCACATGTAATCGGCGGCAATGAACATTCCGTGAGAATTCCATCAAAATTGCGGAAAATCGATAGGGATTCGGCAAAGTTGAAGGATAAGTTGACAAGCGATGGCATTAAGAGTGGCACAACAATGACGACGACGACGACGACCGACGGATCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGCCTTGGATATCTGAAGAAGCATGAACAGAGTCATGCTGAGCATCTTCCATTCAAGTGCGATTACTGTGCACGTTTGTTTAAGCACAAGCGCTCGCGGGATCGCCACACAAAACTGCACACCGGTGACCGGCGATACAGATGTCCCCACTGTGAGGCGGCTTTTTCCCGGAGCGATCACTTGAAGATCCACATGAAGACGCATGACAATCAGAAACCCTTCCAGTGCACCATATGCAATCGCGGCTACAATACAGCAGCGGCTCTTACCTCGCACATGCAAAACCACAAGAAGCAGGCGGCCCTTATCGCGGCCGGCGGTAATCCTCAGGCATTGAACTATAGCCCTCGATCGACCGGGTCTGGCTCCAGCAACGGCAGTCTTTATAAGCGACGCTATGCATTAGTTGCGTCGGCGGAGAGCAGTCCCAGTCGACAGGAATACTCGAAACGAATTCGTGCATCCTCCATGATGTCCTGTGGGTATTGTACGAAAGCGGATTTCATTTCCATCGATCAGTTGAATGCACACATCCAGGCAATGCATGATAAGGAGGCAGCATCTCAGGTGGTATCGGCTTCTGGTCCGACAAGTGTGCCGAATCTGTTTCAACTTTCGTGCGAGTACTGCACCATGAAGTTTCCCAACATTCCTTCGATGTTCCAGCATATGCGGACGACGCACATTGATCGTTTGACCAGTCCCAATTCCTATTTTGATCATTTCAATCGTTTGGCCGCAAGTGGAACGTTCAGTCCGCGATTAGCAGCCACCACAACGCCAAAGTCGTCGAGTTTAAGTGTTCGCGGTGAGATGGAAACCAAAATCAAGCTGGAAGATGACATCAGCATCAGCAGCAAAGTCTCGGAATCGACGATAAAACAGGAGGAGCCAACAGATCTAAGCCGAAACAAACGGCGTTCCCAGACTCCGGCATCACCATCTACACGGGAATCGCCGCCACAAACACAGGCGGCCGTCGCAGTCGCCGAAAAGCCCGGAATGTTCTTCTGCAATCAATGTAACGCCGGACTGCCAGACTTTGAGAGTTTTCGTAACCACTTGAAGACTCACATAACAAATCAGGGAATAAGTGGTTTGGTCTGTCACCATTGCGGTCTAGCGCTGAGGGAACAGTCCGACTATGAGCGGCACGTTATATCTCACTTTCTAATAACAAACTCGGAATTCAACTGTGTTGCCGGCGGCTGCAATAAAAGCTTCAGCAAAACGGATGAACTGCAGCAGCATTTGCTCGATAGCCACGTTCAGACGATGTACAAGTGTTCCCTTTGCTCTGACCTCTTCGAGACGAAGGTGACACTTCAGGTGCACTTTTCGTGCACTCATACGACAGAAACGAAAATATTCCGATGCTCCGCGTGCATGGAAACGTTTCGCAACGACCAGGATTTCAACATTCATGTAAAGACGCGTCATCAGAGCTCCATCAACGGCAATAACTCGTCGTCCTCCTCCGGCTCCAACACCACCACCACCACCACCACCATTCAGTGTATGTTCTGCCGAGCCATTTGCTCATCTGAATTGGAAATGCACTTCCATTTGGCAGCCCACGCACGACAATACCGCTGCCCCTCCTGCCCGGAGACCTTCCATGTGGAATTTCTGCTGGACCGTCATATGCAGAGTCATCATGGTGGTGTAACCCATAAGGAGAGTCCTGAAGGAGTAAATAATCACATTGGGAATAACCATCACATTAATCCAATCTACATGAATGCGATCTTTGGCAAGACGGGATCGCTTGCCGCAGCACAAGCAGCTCAAAATAACAACAATAACATCCTTGACTATAATCTAGCATTTGCTGCCAACATAAACAAGGGACTTTTTCCCGCAGCTGGTGGTGCCGGTGGAAAATTCTACAATGCTTTGCAGGTGGACACAACCATGAAACATCCTCCACCCTCTTCGCTAATGTACGGCTTAGGGCAGCGTTACTTCGATACCAGCCGCACCCTCATCGACATGTACAACAAACATCAACAGGAGAAATCGGCGGCAGCCGCAGCAGCAGCATCGTCCAGCGGAAATTTCTACATCAGTCCGAAAGCGAATTCAACGGAAGTACCCGGAAACAAACCGCCAATGGCCATCATCAGCGATAGGTCGGCTCCTGCTGCTGCTAATGGTTTCAGCTGTGGCATGTGCGAGCGTAATGATTTTCACACTGAAGCCGAAGTTCACTCGCATCGCAAGATTGTGCATAACCTAAAGACCGGAGTAAGCCTTCGCTGTGCGTACTGCTCTGGTAATTTCAAGTCGAGAAGCGAGTTGGAGCATCACATGAAAACCTGTCACAACACAACGGGCAAACACAAATGCCTGATATGTGATGAGATATTCCCATCGCCAGCCATTTTGGCGGAACACAAGCTGCAGCATTCGAAGGTGGGTCAGTCGGGCAAATGTTCGCACTGTTCGAAAACGCTCGCTGATGTGTCGGATTTTAAGAGTCACATCTCGGAGCATCACAGCAGCAACACCGCTGATGGCGGCGGTCAGCTACTACCCGTGCAGTGCATTTGCTGTCGCCAGACATTAAATTCGGATTTTGAAATTGGACTGCATGCCAAATTCCACACAAAATCGTCGTCTAGTGTGACAGAGAGTGTGTGCGCCTTGTGCCTTGAGGCGATACCAAATGCGATCGGTGATGCCAAAGTATGCGACAAGTGCTGCCGCAAGCACAAGTTCGCCAGCAGTCGGGAGCGCTTCGATGCGAACGGCACCAGAGGACCTTTCATCGAGAATCGTTGCAACTTGTGCAAAATGGTGTTGCCGCATGCCCAGAAATTGCAGGAACATCTGGTCGAGCATACGTTCGCCGGATGCGAGGACAGAGGCTTCATATGTTACATCTGCTCGGCTGTTTTTACAGCGCCCAGCGGTCTGTTGGGCCATATGACCGAGCATGGCCTCAATGCCCGACCCTATGATTGCAACATGTGTACCCAGAAGTTCTATTTCCGTGCCGAATTGGATCATCATTTGGTTGATCATGAAGTAAGAGAGCGCGGCGCTCATCCCCAGCACCAGCATCAACAACAGCGAGATGTCAAAACTACAGCGACCCCAATCGCAGACTCGTCCAGATCGAATGATAAGCCGAAAGCCCAAGAGATCAAAATGGAGCTTGTCGAGGAGCGCAAAAACGAAGACATTATCGACGATGATGATGAGTACATAGAAGTCGAGAAGTTTCCCGGCGATGTTCCGGCAAACAATGTTCCAGCACAGGCGCAGAAAGATGACAAGTAA
- Protein Sequence
- MALKMLYRGPSSRLENLIEKIQATKEVVNSDLYSTHTSSSYSPSISDGTITPNSLHHQLHHHNHHNQHHHHHNHHQHQQHHLSHQLHLQQLHAHQQQPHCRYDSEEGNHHHHHPQQQQRVRNHNRLVSGAAINGAAVSGGDDDDDNDDDEQNEAVDAADSGEERISQSKTTTNTTGGAVAVLAVQRGDDGDDDDDDDNGDDEGEGRHRHSGGASHVIGGNEHSVRIPSKLRKIDRDSAKLKDKLTSDGIKSGTTMTTTTTTDGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALIAAGGNPQALNYSPRSTGSGSSNGSLYKRRYALVASAESSPSRQEYSKRIRASSMMSCGYCTKADFISIDQLNAHIQAMHDKEAASQVVSASGPTSVPNLFQLSCEYCTMKFPNIPSMFQHMRTTHIDRLTSPNSYFDHFNRLAASGTFSPRLAATTTPKSSSLSVRGEMETKIKLEDDISISSKVSESTIKQEEPTDLSRNKRRSQTPASPSTRESPPQTQAAVAVAEKPGMFFCNQCNAGLPDFESFRNHLKTHITNQGISGLVCHHCGLALREQSDYERHVISHFLITNSEFNCVAGGCNKSFSKTDELQQHLLDSHVQTMYKCSLCSDLFETKVTLQVHFSCTHTTETKIFRCSACMETFRNDQDFNIHVKTRHQSSINGNNSSSSSGSNTTTTTTTIQCMFCRAICSSELEMHFHLAAHARQYRCPSCPETFHVEFLLDRHMQSHHGGVTHKESPEGVNNHIGNNHHINPIYMNAIFGKTGSLAAAQAAQNNNNNILDYNLAFAANINKGLFPAAGGAGGKFYNALQVDTTMKHPPPSSLMYGLGQRYFDTSRTLIDMYNKHQQEKSAAAAAAASSSGNFYISPKANSTEVPGNKPPMAIISDRSAPAAANGFSCGMCERNDFHTEAEVHSHRKIVHNLKTGVSLRCAYCSGNFKSRSELEHHMKTCHNTTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCSKTLADVSDFKSHISEHHSSNTADGGGQLLPVQCICCRQTLNSDFEIGLHAKFHTKSSSSVTESVCALCLEAIPNAIGDAKVCDKCCRKHKFASSRERFDANGTRGPFIENRCNLCKMVLPHAQKLQEHLVEHTFAGCEDRGFICYICSAVFTAPSGLLGHMTEHGLNARPYDCNMCTQKFYFRAELDHHLVDHEVRERGAHPQHQHQQQRDVKTTATPIADSSRSNDKPKAQEIKMELVEERKNEDIIDDDDEYIEVEKFPGDVPANNVPAQAQKDDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -