Nscu012536.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- -
- Assembly
- GCA_947095585.1
- Location
- OX352762.1:94778982-94782495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.98 1.6e+02 4.2 0.1 2 23 237 259 236 259 0.88 2 19 0.014 2.3 10.0 4.2 2 19 302 319 301 321 0.93 3 19 0.19 31 6.4 1.0 2 23 333 354 332 354 0.95 4 19 0.00027 0.044 15.4 0.4 2 23 362 384 361 384 0.95 5 19 3.5e-05 0.0058 18.1 1.8 1 23 390 412 390 412 0.97 6 19 0.083 14 7.6 3.9 1 23 418 441 418 441 0.95 7 19 5e-05 0.0083 17.7 2.3 1 23 447 469 447 469 0.98 8 19 3.6 5.9e+02 2.4 0.0 2 21 479 498 479 499 0.89 9 19 0.0021 0.35 12.6 0.4 3 23 519 540 517 540 0.96 10 19 0.018 3 9.6 3.8 1 23 545 567 545 567 0.96 11 19 0.49 81 5.1 0.1 1 23 583 608 583 608 0.96 12 19 0.0087 1.4 10.6 0.5 2 23 615 637 614 637 0.94 13 19 0.00052 0.086 14.5 0.7 1 23 642 665 642 665 0.96 14 19 0.28 46 5.9 0.1 2 23 671 693 670 693 0.91 15 19 0.00074 0.12 14.0 0.3 3 23 698 719 696 719 0.96 16 19 0.0024 0.4 12.4 0.6 1 23 725 748 725 748 0.96 17 19 0.00063 0.1 14.2 1.6 1 23 754 776 754 776 0.98 18 19 3e-06 0.00049 21.5 4.1 1 23 782 804 782 804 0.99 19 19 0.2 33 6.3 0.1 1 23 810 838 810 838 0.87
Sequence Information
- Coding Sequence
- ATGAAGCTAATGAAATGCTTACACTGCAGTGTAAGATTAAAGAAAACCAATTCCCATGCAATATTCGACACAACTGGCATTGAATTGCAGCTTGACAAATTACTGGAAAAACACTTTGGAATAGCTGTATTGGAAAACACGAATCCATTGGCTGAACAGCAAGTCCTTTGCGAAGATTGTGTGAACCAACTGATCGATTTATTTGATTTATCGGAACGGGAGCGTGAACAAAGTGACAATGTTCATTCGGAAGAGCGAATATTAAACCATCCATCAATAACGAAGAATGATAGTAATGAGCAACAACCGCCGATCGTCGACGAATTTGAATTCCCAATAATAGAGGATGAGCATGATAGTCTACCAAATACAGAAGATGAAGAGGAAGAGGCGTCTCTTGCAGAATGCATCGAGGAAGAAAACGTAGCCACTAAAGGAACTAAGAGCGATTCATTTCCTGCATACAAGGCTACGAAGAACAGCCAAGGCGATAGCAATGTAGTAGATAACATCGTTGCGCAGGTTAATGATAACGAAACTTATTCCGAGGAGCAAAACTTGAAGGAATTCAATCTAACAACGAGGGATTCAACCGATTGTGACGAACAAGTTCAATGTCTGGATGATGTGGAAGATATCGATGTTGGCGAATATCTATCAAAAGTTATAAACACTGATTTGGAGGAAATCACATACGAGCAAAACACCCAATGCAATCTATGTTCAGAAGTTTTGACGACGCATGATGCGGTAATATTGCATGCCGCCAACGATCACCAAGACGAAAAACAACAATTTTCATGCATAGTTTGCAATAGTAGTGAAAAATTTCGAACAACAAAACAATACTCGGTTCACTTGGTTATTAAGCACTATGAGTTGACCACACTTAGCATTTACTGTGTTTGTCCTGAGTGTAATAAGAGATTCTCTGATTTTATTGAATTTAACAAGCACTCGTGTTGCGTTAAGATATCTCACACAAAAGCGATACTGGAGTGCCAAGTTTGTCTAAAGGAATTCCCCTCATCCAAGAGACTTCGATTTCATATGCAATTCCACCGGGAAAGACGCCGTCCCAAAGTCTGTTTCTATTGCGACAAATTCTTTCGTGATGATGAAGAACTATTTGTACATATTATGTACAGCCATGATCCGGAAAATATTTTCGTTTGCAAAAAGTGCGATCGTGTTTGTTCAAATGAGGACAACTATCAAGCGCACGTTAAACTCCACGATGCAGTTAGACAGTTCAGCTGTGACTTGTGTCCCAAAAAGTATATGTACAAACAATTACTCAATTATCATAAGGAAAGCTGTCATTCTTTCAATGATCTGTACAAATGTGAATTGTGTCATAAGATGCTTGCCAGCAAATCCGTTCTTAAAAAGCACATGAATCTACATATTGTCGACACTGATGCTACTGTGCGTGTCTGCTCGGAATGTGGACTTATTGGTGAAAGCGAAGAGGACACGCAGAAGCACATCTCAAAGGAAACATCCTGCAACGAGGCTATATTTGAAGAGAAAACACTTAAAATTGCACTCGCATGTGAACACTGTGAAATGGCTTACACAAGTGTACAACAACTGAAAGCGCATAGATCTACAGCACATCCGAAGGAGGAATATCTTTGTCGACTGTGCCATCAGTCGTACGACGAATATAAGAAGTTAAAGACCCACATGTTAACACATAAAGATTACGAGCCATTGCAAACCACTTTCCCTGTTAATAGATATTACGTTTGCAATGTTGGATCGTGTGAGCAAATTTACATCATGTGGACATCGCTTGGCAATCATAAACGATCGAAACATGATCGTGAGATCCAGCTAACTTGTAAGCCATGTAACCAGCAATTTGAAACAAAGTGGCAACTGAATTCCCATCTGGAAAAAGGCCATGTGGACGTAGAATTTCAGTGTCAGTTTTGTTCAAAAATCTTCCCAACCCAAATGTCACTGTCGGTACATGTCGCAAGGAAGCACAACAACAATCACAAGACTTGCTTAGTATGTAAAGCAACTTATAAAGATGATGCGGCACTTCAAGAGCACACTGATCTCATGCACGTCAAAGTAAATTGTGAATTGTGCAACAAATTGGTTAAGAACAAACGTAATCTTGAGGTTCATGTCCGGATGATTCACAACAACATTAAACGGTTCTTCTGTGAGGTGTGCAAAAAGGGTTACTACAATAAAAACGATTTACTAGGACATGAAAAAACGGCGCACAAACAAGTAAAGCCCTTTAAATGTGATAAATGTACTTTTTCAACGTCTTATGAGAAATCGCTGGAGACCCACATGGCAATGCATAACAATAATTTTCCTTTTCAATGTCCAATTTGCTCCAGAGAATTCACAAGAAAATCCTGCATGACCTTACATATGCGACGTCATGAGAATAAGAAACCTTTCGTCTGTTCGGACACAATTTCAAATGGTTGTAAGGCTGCTTTTGTTTCACGTGGAATCTTAAATAAACACATTCGCGAAAAACATTCTTGCGATAATAATGAAATGACGACCACAACTGATGACCCTTCAACTACGAAAAGAAGAAAACGAATGTCTAGAACTGTTAAACATATTGAATATTTACATGGGTTTAATGATGACGATGATGATGATGATTATGATAGTAAAGAGTATATTGTTCTGGCCGATGGCTCTGTTGACAATGCATTGGACACAAATCTAATTGTTTTCAAAGAGGAGGAATACGAGATAGCAGATGACAAAATAAATGTTTTTCAGGAAAGCGAAAATGATGGGAATATTGTTGTAAATTTTGATATTGATCAAATTACGCAAAACTATAAAGATGCAGGGGAGTCCTGA
- Protein Sequence
- MKLMKCLHCSVRLKKTNSHAIFDTTGIELQLDKLLEKHFGIAVLENTNPLAEQQVLCEDCVNQLIDLFDLSEREREQSDNVHSEERILNHPSITKNDSNEQQPPIVDEFEFPIIEDEHDSLPNTEDEEEEASLAECIEEENVATKGTKSDSFPAYKATKNSQGDSNVVDNIVAQVNDNETYSEEQNLKEFNLTTRDSTDCDEQVQCLDDVEDIDVGEYLSKVINTDLEEITYEQNTQCNLCSEVLTTHDAVILHAANDHQDEKQQFSCIVCNSSEKFRTTKQYSVHLVIKHYELTTLSIYCVCPECNKRFSDFIEFNKHSCCVKISHTKAILECQVCLKEFPSSKRLRFHMQFHRERRRPKVCFYCDKFFRDDEELFVHIMYSHDPENIFVCKKCDRVCSNEDNYQAHVKLHDAVRQFSCDLCPKKYMYKQLLNYHKESCHSFNDLYKCELCHKMLASKSVLKKHMNLHIVDTDATVRVCSECGLIGESEEDTQKHISKETSCNEAIFEEKTLKIALACEHCEMAYTSVQQLKAHRSTAHPKEEYLCRLCHQSYDEYKKLKTHMLTHKDYEPLQTTFPVNRYYVCNVGSCEQIYIMWTSLGNHKRSKHDREIQLTCKPCNQQFETKWQLNSHLEKGHVDVEFQCQFCSKIFPTQMSLSVHVARKHNNNHKTCLVCKATYKDDAALQEHTDLMHVKVNCELCNKLVKNKRNLEVHVRMIHNNIKRFFCEVCKKGYYNKNDLLGHEKTAHKQVKPFKCDKCTFSTSYEKSLETHMAMHNNNFPFQCPICSREFTRKSCMTLHMRRHENKKPFVCSDTISNGCKAAFVSRGILNKHIREKHSCDNNEMTTTTDDPSTTKRRKRMSRTVKHIEYLHGFNDDDDDDDYDSKEYIVLADGSVDNALDTNLIVFKEEEYEIADDKINVFQESENDGNIVVNFDIDQITQNYKDAGES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -