Nscu027989.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nephrocerus scutellatus
Gene Symbol
-
Assembly
GCA_947095585.1
Location
OX352763.1:116948555-116951298[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0046 0.76 11.5 0.5 3 23 124 145 123 145 0.93
2 13 0.0029 0.47 12.1 0.8 2 23 151 173 150 173 0.95
3 13 5.5e-05 0.009 17.6 2.3 2 23 183 205 183 205 0.93
4 13 8.3e-06 0.0014 20.1 4.4 1 23 463 485 463 485 0.97
5 13 2e-07 3.2e-05 25.2 1.7 1 23 491 513 491 513 0.98
6 13 0.0012 0.19 13.4 9.7 1 23 518 541 518 541 0.91
7 13 5.1e-07 8.5e-05 23.9 1.3 2 23 552 573 552 573 0.97
8 13 2.5e-06 0.00041 21.8 2.2 1 23 578 600 578 600 0.99
9 13 3.3e-06 0.00054 21.4 0.3 1 23 606 628 606 628 0.96
10 13 6.8e-06 0.0011 20.4 1.1 1 23 634 656 634 656 0.98
11 13 8.1e-06 0.0013 20.2 0.6 3 23 664 684 662 684 0.96
12 13 5e-05 0.0083 17.7 1.1 1 23 690 712 690 712 0.99
13 13 1.3e-05 0.0021 19.5 2.6 1 23 717 740 717 740 0.98

Sequence Information

Coding Sequence
ATGGCAAATCTATCAGCACTGGACGTAGAAAAAATCTGTCGAGTTTGTTTGCAAAGTAACTTGGACCTTTTTTTAATATTCGACGAATCTTACTCCGTTGACGGAATCGGCATATCAGATATGTTAAGTGAATGCACAATACACAAGGTAAAACGTTTTGATGAGCTCCCTCATTTGATTTGCAACGATTGTATGGGAAATGTAAAAAACGCTTTTCGTTTTAAGAAGCAATGTGAAAGATCCTATCGGTTACTGGTAGAATTGTTAGAAAAAAGGCAAAGTGATGAGAAAAAGTTAATACAAACTTTCTGTAATACGGACGTTTCATCGGAGAAAGCCACTCAGACCGAAGATACTGCTCTTAATCCATGTGAAAAATGCGATGAGAAGTTTTTTAGTTATGAAGCGTTAAAGGAACATCGAACAAATGATCATAAAGGAAGCGCAAATCAATGTAGATTTTGTCTGAAAACTTTTAATCGCATCGGCTACCTAAAGAGCCACATTGCAGTGTTCCACCCAGAAATTGGTTGTACTTCTTCCAATACGTGTAGCGTATGTGAAAAACAGTTTACACGCAAAGATCATGTTAGGCGGCACATGGTTAATGTGCATAAAGTAAAAGATCCTGAATGGGAAGAAAAAAACTCACTTGAAGAACCTGAAATAGAATATACATATGAAGATGATAAATATGTGGAAGATATTTGCGCTGCACTACAGTCTAATATTGCTTCGATATCTTTACCCACACCATCATCTTCTCCGTCATCACCAACTTCAGCTTGCTATGATTATAATGAAGAGGACAATGCAACTCTCAAGAAGTCCAGTTCAGAGGCAGCCATAAACAGCACTGATGGACAGAACGATGAAAAGCCCCATGCAAAGTTACTGGATTCTGGAATGATTAGTAATGAAATTCCAAATCAACTTGACGTTCCAACATGTCACAAACAAATTAAAAATGAAAGGGAAGAACAATTAATTTTTCCGCTTCTCGACTTGGTCGAACTAAAACCGGAAGTTGAGAATCAAGAAAATTCTATAACAAATGTAGATTCCTCTTTCAATGATAAGCAAATTTCTGCTAAAGAAGTGAATCCTTTGGCGGCGGGCAGTCCTATTGGTGGCGTTAAACCAATTGGAAAGCTGTCTGAATCTATTGGAGATTCTAAGCAAATGGCTGCTAAACAAGTGAATCCTATGGCGGTGGACAGTCCTATTGGTGACGTTAAACCAATTGGAAAACTGGCTGAATCTATAGGAGATCCTACGCAAATTGCTGCTAAACAAGTGAATCCTCTGGCGGCGGACAGTCCTATTGGTGACAGTAAACCAATTGGAAAACTGTCTGAATCTATTACAGATCCTAACAAACATAAATACAAATGCATTCAGTGCAATAGGACATTTAATCGAAGTGGTCATTTAAAAAGACACATGCTTACACACGGAGATGAAAAACCATTTCCATGTAGTATTTGTCCGAAACGCTTCAAACGTGCAGATCATTTGAAAATTCATCTCAAATCTCATAGTGAGGCCAATTTCCATTGCGATGAATGTCACCATTCATTTACACGTAAAGAGCATTTGAAGAGACACAAGGATCTGACGCACAGTGGCCTGGCACATTCGTTGAAGACAGAAGTGTGTGAGGTTTGTAGTAAGAGCTTCACCACAAAAAGCTATTTGCGGCGACATTTACTATCTCATACCGATAAACGGTACTCCTGCAGAAATTGTGAAAAGATGTTTATGTCGAAAGAAAATCTAAAGGAACACATGAAAACTCATTCGAATGCCAAGCCTTTCCTTTGCTCTGAATGTGGAGCTCGTTTTGTGCGTAATGATTACTTGCTAATACATATGCGACGGCACAAAGGCGAAAAGCCATATAAATGCAAATTCTGCAATAAAGGATTTCCTCGGGCGACAGATCTAAATGTTCACGAGCGATACCATACTGGAGAAAAGACACATTTATGCACAATATGCGGCAAAGGTTTCCAACGAGGCTACAATCTAGTTGTTCATATGAGAGTACATACCGGCGAACGGCCGTATAAGTGCTCACATTGTCCGAGTAGTTTCGCCCAGGGCAATGATCTAAAGGCGCATGTTCGACGGCACACTGGCGAACGTTTTAAATGTGAAACCTGCGGATGTGGTTTTATTCAAGCATATCATTTATCGCAGCACATGTTAACAGTGCATGGTATCCAAGTGAAACCACGCACCGGTCGTGTCACCAAATTTAAAACAACCCAAGAGCAGGAACAACAAATTAAGCAGAATCTTGACTATAAATTTGATCCAACCATTATCAAAACTGATGACCCATTTGCAGTTATTAGCGATCGTTGA
Protein Sequence
MANLSALDVEKICRVCLQSNLDLFLIFDESYSVDGIGISDMLSECTIHKVKRFDELPHLICNDCMGNVKNAFRFKKQCERSYRLLVELLEKRQSDEKKLIQTFCNTDVSSEKATQTEDTALNPCEKCDEKFFSYEALKEHRTNDHKGSANQCRFCLKTFNRIGYLKSHIAVFHPEIGCTSSNTCSVCEKQFTRKDHVRRHMVNVHKVKDPEWEEKNSLEEPEIEYTYEDDKYVEDICAALQSNIASISLPTPSSSPSSPTSACYDYNEEDNATLKKSSSEAAINSTDGQNDEKPHAKLLDSGMISNEIPNQLDVPTCHKQIKNEREEQLIFPLLDLVELKPEVENQENSITNVDSSFNDKQISAKEVNPLAAGSPIGGVKPIGKLSESIGDSKQMAAKQVNPMAVDSPIGDVKPIGKLAESIGDPTQIAAKQVNPLAADSPIGDSKPIGKLSESITDPNKHKYKCIQCNRTFNRSGHLKRHMLTHGDEKPFPCSICPKRFKRADHLKIHLKSHSEANFHCDECHHSFTRKEHLKRHKDLTHSGLAHSLKTEVCEVCSKSFTTKSYLRRHLLSHTDKRYSCRNCEKMFMSKENLKEHMKTHSNAKPFLCSECGARFVRNDYLLIHMRRHKGEKPYKCKFCNKGFPRATDLNVHERYHTGEKTHLCTICGKGFQRGYNLVVHMRVHTGERPYKCSHCPSSFAQGNDLKAHVRRHTGERFKCETCGCGFIQAYHLSQHMLTVHGIQVKPRTGRVTKFKTTQEQEQQIKQNLDYKFDPTIIKTDDPFAVISDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-