Nscu018955.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nephrocerus scutellatus
Gene Symbol
ZNF236
Assembly
GCA_947095585.1
Location
OX352764.1:79718617-79721491[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 8.9 1.5e+03 1.2 0.6 9 23 3 18 2 18 0.92
2 20 0.00037 0.061 14.9 2.2 1 23 24 46 24 46 0.98
3 20 0.0037 0.6 11.8 7.7 1 23 56 78 56 78 0.97
4 20 0.00062 0.1 14.2 0.6 1 23 84 107 84 107 0.96
5 20 0.0007 0.12 14.1 1.0 1 23 145 167 145 167 0.94
6 20 6.9e-06 0.0011 20.4 2.2 1 23 173 196 173 196 0.96
7 20 8.3e-05 0.014 17.0 0.5 1 23 202 225 202 225 0.97
8 20 0.21 35 6.3 3.9 1 23 235 258 235 258 0.95
9 20 8.4e-05 0.014 17.0 0.3 3 23 355 375 353 375 0.97
10 20 1.4e-05 0.0023 19.4 1.4 1 23 381 403 381 403 0.98
11 20 0.00025 0.041 15.5 2.0 1 23 416 438 416 438 0.97
12 20 0.0017 0.27 12.9 2.6 1 20 445 464 445 466 0.94
13 20 0.0049 0.81 11.4 5.3 1 23 501 523 501 523 0.98
14 20 0.00023 0.038 15.6 3.5 1 23 529 551 529 551 0.98
15 20 0.016 2.6 9.8 0.6 1 23 557 580 557 580 0.95
16 20 0.00035 0.057 15.0 1.8 1 23 586 608 586 608 0.96
17 20 7e-07 0.00012 23.5 3.0 1 23 733 755 733 755 0.97
18 20 0.00011 0.018 16.6 2.5 1 23 761 783 761 783 0.97
19 20 4.3e-06 0.00071 21.0 0.1 1 23 790 812 790 812 0.98
20 20 0.0006 0.099 14.3 0.6 1 23 818 841 818 841 0.95

Sequence Information

Coding Sequence
ATGACAAGTTTTTCCACCCTATCAAAGCTTGGTCTACACAAGCGTAACAAGCACATCCTTCTCAAAGAATTTCAATGCTACAAGTGTCCAAAAGCATATAACTTCAAAAATAATTATCAACTTCATTTGGATACTCACATTTCCCAAACGTTTGCAAATGCTGACCATGTTTGTCAGCATTGCGGAAAAAGCTTTCATCGCACTACATCTTTTCGGGGTCACTTGCAATCACATCAATTTGAGGACATGTTTGAATGTGTCCGTTGTGGAAAGCGTTTTGAGTTTCGTACCGCTTTTGAGGTTCATCTAAAGAATGTCCATCGTTCCGGTGCTGATGGCGCTATAGAAGAAATTCTGGCAGAGGCCGAAAGGAAAACACGCCTCCATAGTAAATCATACAAAACCACCTTAAGTACCTCCAGGGTTAAAAAATATGAGTGTCAGACTTGTAATAAAGTATTTCAAAAACCATGCCTCTTGTGGCGCCACGAAGCGGGGCATTTGAGTGTTAAGCCGTTTCAGTGCCGCAAGTGCGACCAGTCATTTACACAAAAACCTTCTTTAGAACGCCACCAACTGCAGAAACATCAGGGTGAAAAACTATTCAGTTGCCCCAAATGCAAGCTAAAAGTTGCTCAAAAGGCAAATCTCATCACTCATATTAAACGCACACATCCGCTGGATGCCAATTTAGAAACAATGTTTCCGTGCAATCATTGCGCTTGCCTTTTCACGAAACTTAACAGTTTAAGTCGGCACAAAGCAATGATGCATCGTTCAGAAGGTGGACAGCTTTTTCCTGATACAGCAAACTGCGATGATGATGCTGAAGATGACCCAATTCGTACTATGCGTAACGTAATGGACCAACTAAAGTTTATACAATTCAAAATGCAAGCAAAAGAAATAAAAGAAAAATTGCCCGAGAAGGTAACTGAACCGGTGGAGGTCAAAGAACTTCGTAAAACTATTACGCTTGTAGACACTCTCAATCCATCGAAAGAGAAAACTTTTAAAACGGCATACCAAATTATACGTTCAGATGGATCACGATATATAGCATGCAAATTTTGCGCAAAGGAATTTCAACGACCATATGATCTTCTAAGACACCTTCGCATTCATACACATGAGAGACCATTTAAATGCGAATACTGTGAGAAGGCATTTTCAACCAAAACTACATTGGGAATGCATACAAAAGTTCATGCGACCAAAAATAATGGTACAGTGATAAATAGAATACATCCGTGTACGATTTGTGAAAAGCGATTTGATTCTATACGGCAACTGGACACACATACGAGAACTCACGATAAGCCTAGTATGCTTTATGTATGTCAAACCTGCTCTCGCACTTTTTCGTCAAAAAGTGCTTTTAGTTCACACAAACATAATTATGAAGATAAAGAATTTGAAGCTCTACGTTCATTTTTATTGCCACCAATTAAAATAGATGATGGAAACTGTGCAGCTGATGAGGATTATTCTAAACGTATGCATCAGTGTTCTGTATGCGGATTTAAAATGAAAAAACGCTCCCACTTAATACAACACGAACGGACGCATTCTGGCTTAAAACCATTTAAATGTGCCACATGTGAAAGGTTGTTTACAACCAAAAGTTCTTTAAATCTTCACCATAAAATTCACTTAGCTCACAAGCCTTACGCATGTGAAAAATGTCCACATGCGAAGTTTTCAACAAATGCGCAACTTGTGCGGCACAAGATTGTACACAGTTTAAAAAGAAATTTTCTTTGTCCATATTGTGATGCTCCGTTTAAGACTAGTGACACGTGCAAAAATCATATGCTTACTCATATTCGAGGTTTGCTTGGCAACAATGAAATTACAAGTCAACAGAAGGATGCTAAACCAGCTGAAAATAAAGTTCAGGCGGAAATAAATTCACTGAAAAATGTTTTGACTTTAGAGGACCAAAATAACTTTTCGCCCAGTTACAATTCAACTGAAACGAACGACAAACAACATACGCACTTGTCACCGAAATTTATAGAATTAGAAATGATACCCAATTGTCAAAAGCATAATCATCGAAACATTACAATTGAATCGATTCCAGTAACATCAATTAGCACAGAAAGTCAGTCTAACATGGTTGCCGAAAGTGAGTGCTCTCAGGAGTCAGAGCAAATAGTTACCATTGAAGCTAGCAATCCCTCAATATCGGCGCACAATTGCTCCATTTGCAAAAAGATATTTCAAAAACCAAGTGATCTGCAACGTCATATGCGAACACACACAAAAGAACGACCATTTGCCTGTGATTTATGTGCTAAAACATTCGCTCTTCAGTCCACACTAAAACATCATCGAAAAACTCACGATACAACAAGGCAGACATTTGAATGCCAAGTTTGTGGCAAGCGATACGCTTCAAACAAAGCTCTCGTCGTTCATCTGCGTATTCACACGGGTGAACGGCCTTTTTCTTGCGAATTGTGTGGTAATGCCTTTCGCACTTCTGGTCATCGTATCGCTCATATAAAGGCAAAGCACAAATAA
Protein Sequence
MTSFSTLSKLGLHKRNKHILLKEFQCYKCPKAYNFKNNYQLHLDTHISQTFANADHVCQHCGKSFHRTTSFRGHLQSHQFEDMFECVRCGKRFEFRTAFEVHLKNVHRSGADGAIEEILAEAERKTRLHSKSYKTTLSTSRVKKYECQTCNKVFQKPCLLWRHEAGHLSVKPFQCRKCDQSFTQKPSLERHQLQKHQGEKLFSCPKCKLKVAQKANLITHIKRTHPLDANLETMFPCNHCACLFTKLNSLSRHKAMMHRSEGGQLFPDTANCDDDAEDDPIRTMRNVMDQLKFIQFKMQAKEIKEKLPEKVTEPVEVKELRKTITLVDTLNPSKEKTFKTAYQIIRSDGSRYIACKFCAKEFQRPYDLLRHLRIHTHERPFKCEYCEKAFSTKTTLGMHTKVHATKNNGTVINRIHPCTICEKRFDSIRQLDTHTRTHDKPSMLYVCQTCSRTFSSKSAFSSHKHNYEDKEFEALRSFLLPPIKIDDGNCAADEDYSKRMHQCSVCGFKMKKRSHLIQHERTHSGLKPFKCATCERLFTTKSSLNLHHKIHLAHKPYACEKCPHAKFSTNAQLVRHKIVHSLKRNFLCPYCDAPFKTSDTCKNHMLTHIRGLLGNNEITSQQKDAKPAENKVQAEINSLKNVLTLEDQNNFSPSYNSTETNDKQHTHLSPKFIELEMIPNCQKHNHRNITIESIPVTSISTESQSNMVAESECSQESEQIVTIEASNPSISAHNCSICKKIFQKPSDLQRHMRTHTKERPFACDLCAKTFALQSTLKHHRKTHDTTRQTFECQVCGKRYASNKALVVHLRIHTGERPFSCELCGNAFRTSGHRIAHIKAKHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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