Nscu027988.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- -
- Assembly
- GCA_947095585.1
- Location
- OX352763.1:116943961-116946375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0037 0.61 11.8 1.5 1 23 122 145 122 145 0.94 2 13 0.058 9.5 8.0 2.3 2 23 151 173 150 173 0.95 3 13 2e-05 0.0034 18.9 2.3 2 23 183 205 183 205 0.94 4 13 2.5e-07 4.1e-05 24.9 4.8 1 23 400 422 400 422 0.98 5 13 2e-07 3.2e-05 25.2 1.5 1 23 428 450 428 450 0.98 6 13 6.8e-05 0.011 17.3 3.0 1 23 455 478 455 478 0.95 7 13 7.8e-07 0.00013 23.4 1.2 2 23 487 508 487 508 0.95 8 13 1.8e-05 0.003 19.1 2.2 1 23 513 535 513 535 0.99 9 13 1.1e-06 0.00018 22.9 0.3 1 23 541 563 541 563 0.96 10 13 1.9e-05 0.0031 19.0 0.9 1 23 569 591 569 591 0.98 11 13 1.9e-07 3.1e-05 25.3 0.7 1 23 597 619 597 619 0.97 12 13 2.1e-06 0.00034 22.0 2.0 1 23 625 647 625 647 0.99 13 13 9.2e-06 0.0015 20.0 2.4 1 23 652 675 652 675 0.97
Sequence Information
- Coding Sequence
- ATGGCAGATATAGCAGCGCTGGACGTGGAAAAAATCTGTCGAGTTTGTTTGCAAAGTAACTTGGAACTTTTTTTAATATTCGACGACTCTTACTCCGTTGACGGAATCGGCATATCAGATATGTTAAGTGAATGCACAATACACAAGGTAAAACGATTTGATGAGCTTCCTCATTTGATTTGCAACGAGTGCATGGGAAATGTAAAAAACGCTTTTCGCTTTAAAAAACAATGTGAAAGATCCCATCGGTTACTTATAGACTTGTTAGAAAAAAGGCAAGATGATGAGATAAAGCCAATCCTAACTTTCAGTAATACGGACGTTTCATCGGAGAAAGCCACTCAAACAGAAGATACTGCTCTGTATCCATGTGAACTATGTGAGAAAAAGTTTTTTAGTTATGACCTGTTCAAGGAACATCGAACAAATGATCATAAAGGAAGCGCAGTTCAGTGTCGGTTCTGCTTAAAGAATTTTCACCGGCTCGACTACCTCAAGGGCCACATTGCAAAGTTCCACCCAGAAAATGGTTTTACCTCCACGAATACGTGTAGCATATGTAAAAAAAACTTCATGCGAAAAGATCATCTTTCGCGGCACATGGTTATCGTGCATAGAGTTAAGGTCTCTGGATGGGGTGAAAAAAATGCACTTGATGAACCTGAAATTGAATTTAAATGCGAAATAGATAAATATGAGGAAGATGATTGTGCTGCACAACAGCTTAAGAATCCTTCTATTTCTCTACCAACACAATCAATTCTTTCGCCAGTAGCAGCTTCTGTTTGCTCTGATGAATCTGAGCAAGGCAATGCTATTTCTGAGGAAACAAAATCAAAGACAAATAGCATACAGAGCAGCGATGACGAATACGATGATATACCACTCGCGAAGCTGTTGGCTTCTGGAAAGTTAAATACGAGTACAAAACAAATTGAAGATCAAGGGTTTATCTCAATTTCCGCAAGCAATCAAATTATTACGGAAAAGGAAAAACGAGTATTTTCCGTTTTGGCCAATGTGCAATCTGAAGTTGAGAATCAAGAACATTCTACAACGAATACAAATTCTTTTGTTAATGATAAGGAAATTGTTGTTAAAAAAGAGAGTCCAAAAGCGGCAAAAAGTACTACTGGTGATGATAAACCGGTTCGAGGAAAACTGTTGGAATCTGTAACAGAAACTGACAAACCTAAATACAACTGCACAGGGTGCAGTAAGACATTTAAACAAAATTCTCATTTAAAACGGCATTTGCTTACACACGGAAACGAAAAACCATTCCCCTGCAATATTTGTCCGAGACGCTTTAAACGTGCAGATCATTTGAAAAATCATCTGGAAACTCATAATGAGGCGACTTTTCGTTGCGATAAATGTCAACATGCCTTTACACGCAGAGATTATTTAAAGGATCACATAGAACTTAAGCACAGTGGCCTGAAACTTTCACCAGAAGTTTGTGAGATTTGTCATAAGAGCTTTGCCACAAAAAGTTATTTACGACGGCATTTAGTTATACATTTGCATAAGCGCTACTCTTGCCGAAATTGTGAGAAGAAGTTTATGACAAAAGAAAATATGGAGGAACACATGAAAACGCATTCAAATACGAAGCCATTCCTGTGCTCTGAATGTGGTGCTCGATTTGATCGCAGCGATAATTTGGTGATACATATGCGACGGCACAATGGTGAAAAGCCATTTAAATGCAAATTCTGCAATAAAGCCTTCCCTCGATTGATTGATCTAAATGTTCACGAGAGATACCACACTGGTGAAAAGACACATATATGCACAATTTGCGGGAAAGGATTCCAACGAAGCTACAATCTAGTTGTTCATATGAGAGTTCACACAGGTGAACGGCCATATAAGTGCTCTCATTGTCCAAGTAGCTTCGCCCAAAGCTATGATCTAAAAGCGCATGTTCGTCGGCATACTGGTGAACGTTTTAAATGTGAAATCTGCGGATGTGGTTTTATTCAAGCATACCATTTATCCCAGCACATGTCAAGGGTGCATGGTATCCAAGTTAAAGCCCGCACAGGTCGTATTACTAAATATAAAACACAACAGGAGCAGGAACAACAAATCAAGGAGAATCTTAATAAATAG
- Protein Sequence
- MADIAALDVEKICRVCLQSNLELFLIFDDSYSVDGIGISDMLSECTIHKVKRFDELPHLICNECMGNVKNAFRFKKQCERSHRLLIDLLEKRQDDEIKPILTFSNTDVSSEKATQTEDTALYPCELCEKKFFSYDLFKEHRTNDHKGSAVQCRFCLKNFHRLDYLKGHIAKFHPENGFTSTNTCSICKKNFMRKDHLSRHMVIVHRVKVSGWGEKNALDEPEIEFKCEIDKYEEDDCAAQQLKNPSISLPTQSILSPVAASVCSDESEQGNAISEETKSKTNSIQSSDDEYDDIPLAKLLASGKLNTSTKQIEDQGFISISASNQIITEKEKRVFSVLANVQSEVENQEHSTTNTNSFVNDKEIVVKKESPKAAKSTTGDDKPVRGKLLESVTETDKPKYNCTGCSKTFKQNSHLKRHLLTHGNEKPFPCNICPRRFKRADHLKNHLETHNEATFRCDKCQHAFTRRDYLKDHIELKHSGLKLSPEVCEICHKSFATKSYLRRHLVIHLHKRYSCRNCEKKFMTKENMEEHMKTHSNTKPFLCSECGARFDRSDNLVIHMRRHNGEKPFKCKFCNKAFPRLIDLNVHERYHTGEKTHICTICGKGFQRSYNLVVHMRVHTGERPYKCSHCPSSFAQSYDLKAHVRRHTGERFKCEICGCGFIQAYHLSQHMSRVHGIQVKARTGRITKYKTQQEQEQQIKENLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -