Nscu027697.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nephrocerus scutellatus
Gene Symbol
-
Assembly
GCA_947095585.1
Location
OX352763.1:111366771-111371760[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.5e-05 0.0025 19.3 2.4 1 23 201 224 201 224 0.97
2 16 0.00095 0.16 13.7 0.1 1 23 230 253 230 253 0.97
3 16 0.00036 0.06 15.0 0.5 2 23 257 278 256 278 0.97
4 16 0.019 3.2 9.5 0.9 1 23 284 308 284 308 0.92
5 16 0.00021 0.034 15.7 4.6 1 23 314 336 314 336 0.98
6 16 3.5e-06 0.00057 21.3 0.2 1 20 342 361 342 364 0.93
7 16 0.00028 0.045 15.3 2.4 1 23 370 392 370 392 0.97
8 16 2.7e-06 0.00044 21.7 0.1 1 23 398 420 398 420 0.99
9 16 9.4e-05 0.015 16.8 5.7 1 23 652 675 652 675 0.94
10 16 2.5e-05 0.0041 18.6 0.2 2 23 682 703 681 703 0.97
11 16 0.0028 0.46 12.2 4.1 3 23 708 728 706 728 0.96
12 16 5.8e-06 0.00095 20.6 0.1 1 23 734 756 734 756 0.98
13 16 0.00017 0.027 16.0 1.0 1 23 762 784 762 784 0.99
14 16 5.1e-07 8.5e-05 23.9 0.6 1 23 790 812 790 812 0.98
15 16 4.4e-06 0.00072 21.0 1.4 1 23 818 840 818 840 0.97
16 16 2.2e-06 0.00037 21.9 0.7 1 23 846 868 846 868 0.99

Sequence Information

Coding Sequence
ATGGAATCAGAAGTTAGTACTACGAATTTACCCAATGCAAAATGTGCGGAAATTCATTGTCAAACTTCGACGTGTTTTACTATTTTGTGCACATTTTGTGATCTGAAGACCTTCGAGTTTGATGAGTATGTCCAGCATTTTAAAAGGGAACATTTTAAAGAGTTTACCAATAGCTGCAGTAAGACCGAGGAATACCTTTTTGCCGAGGTTAAGAAAGAATCCGACGACTCATCGAGCACTGAACTGGAGGATGCAATACAAGATCCATTCGGGACAAATGACAATAAAGTTGAGAATCCAATTGATGTCTTAGAGATTCCCAGGCAACAAAATGTTCTTAACAACAATGATGAGAAGCGGGATGTAAAATGCAAACCGTATAGTGAATTATGCGGAAACGAGGTAGAGGAGCGGCTAGACCCTGATTGGCAAGCTGGTAAACTACAAAAGGATTCAGCCCACGAAGATGAAAAGAACGACAATCGGAGTGCTGTAAAAATTATTAAGGAAAAGAGAAAACGATCACGCAAGAAGAAAACTATATCTCAACTTGATGATGATAACCTGCCTATTAGTGCAAAAACGATAAAAGTCGAAATATTTAAATGTGAAACATGTGAAAAAAGGTTCAAAATAAAAAAAGATCTTAGGCGTCATATAAAATTGCTGCACAAAAGCTCTATGCCGTATAAATGCCATGATTGCGAAGCCGCGTTTTTTGACGAACGACCATTGCAAATACACATTCTTATAGTGCACAAAAACCTGACGTGTTCAATATGTGCAAAGAAATTTAAAATTTTATATCTATTGGAACAGCATATGCTTCGGCATACTGGAAACCGAAAATTTCAGTGTAAAGTGGAAAATTGTGGAAAAATGTTTTTTACAAAAAAAGAAGTAGATTATCATAATTTAGTACACACAAAGGAACGACcttttgtttgtgaggtttgtggatgtcggtatcgtactcatactcaactgaaagttcataaacgtgtacacacaggtgaaaaaccctacccatgtgaaaattgtggaaaacgcttttcaacgaacgctctgctcaaggaacacatgccaatccattcgagcgaccgtccgcataaatgtgaggtttgtagtgcgacatttgcacggccaaaagcgctccagcatcacaaaaatttacatttaggtgtaaagaaatatgtatgtaaaatatgcggaaaagcatgtgcCCAAGCGGCGGGGCTTGCTGGGCACATGCGAACGCATAATAAAATCCCTTTTGCAAATGTTGTGGATGCAAGATCAATGGAACCGAAAGTTAGTGTCACGAATTTTCCAAATGCAAAATGTGCGGAAATTCATTGCCAAACTGCTGCGTGTTTTACGATTTTATGCACCTTTTGTGATATGAAGACCTTCGAGTTTGATGAGTTTGTCGACCATTTTAAAAGGATACATTTCACCGAGTTAGAAAGAAGCTTCAATAAAACAGATGAATACAATCTTACCGAGATTAAAAAAGAAGAATCTCATGAGTTGGCCAACAAAGAAGTTGAAGCATTACAAGAACAATTTTGGGCCAATGAGGATGAGATGCCTAATTTTGATATTACAATAGATGTGTTGGAGAATGCCCGACCCACATCGGTCAATGACAACGATGAAAAGCGGGATATAAAATGCAAACAGTATTGTGAGCTTAGCGATAATGATGATGTGAAAGACAACGTTTCAGACCCCGACTGGCTAGCTAATGAGAATGCATTAAAAAAGGTACCAACGGACGAGGATGCAAACAACGATAATAAAAGTGCTGTGCAAATTATTGTAAAGGAAAATAGAACCCGATTTCGCAAGGTATTTATTTCTAGTACATACATAGTTGCTCGAAAAAAAACAAAATCCCAGCCTGATGATGATAGCCAGTCTGATAGTGAAACGGCGACAAATGATGAAGCCTTCAAATGTGATACATGTGAAAAAACGTTTAAAACAAAACACACTCTCAGGGCGCACAAAAGTAATTTTCACGCAAAACCGAAAAATATTAAATGTGAAGAGTGTGACAAAGTGTTTCGAGAGGAAAGCGCTTACAAAGTTCATCTCATAAAACATAGAGGTATAAATTGTGCGACCTGTGGCAAGAAATTCTCATGCAATCAGAACTTGAAGCGCCATGAAAAGCGCCACTCTGACATACGGCCATATCCATGTGATCAGTGTCCAAAATCATATGTTACATTGCGCGAACTTAAAGTTCATATGATATCGCATTCAGGTACCAAGccatatgtctgtgaggtttgtggtgttacgtttttaaccaccacccatctgcaaggacacatgcggcgacacaccggcgagaaaccatatgaatgtaaggactgtggaaagcgattttacgtacaataccagctaaaggatcacatagcaatgcattcaagtgatcgaccgtacaaatgtgacatctgcggagcaacattctctcggccaaaagctcttaagcaacataaacatttgcacttgccggagaaaaaatttaaatgtaaaatttgtgataaagcatatgcACAGGCAGCGGGACTGCACTCGCATATGAAATCACATTGA
Protein Sequence
MESEVSTTNLPNAKCAEIHCQTSTCFTILCTFCDLKTFEFDEYVQHFKREHFKEFTNSCSKTEEYLFAEVKKESDDSSSTELEDAIQDPFGTNDNKVENPIDVLEIPRQQNVLNNNDEKRDVKCKPYSELCGNEVEERLDPDWQAGKLQKDSAHEDEKNDNRSAVKIIKEKRKRSRKKKTISQLDDDNLPISAKTIKVEIFKCETCEKRFKIKKDLRRHIKLLHKSSMPYKCHDCEAAFFDERPLQIHILIVHKNLTCSICAKKFKILYLLEQHMLRHTGNRKFQCKVENCGKMFFTKKEVDYHNLVHTKERPFVCEVCGCRYRTHTQLKVHKRVHTGEKPYPCENCGKRFSTNALLKEHMPIHSSDRPHKCEVCSATFARPKALQHHKNLHLGVKKYVCKICGKACAQAAGLAGHMRTHNKIPFANVVDARSMEPKVSVTNFPNAKCAEIHCQTAACFTILCTFCDMKTFEFDEFVDHFKRIHFTELERSFNKTDEYNLTEIKKEESHELANKEVEALQEQFWANEDEMPNFDITIDVLENARPTSVNDNDEKRDIKCKQYCELSDNDDVKDNVSDPDWLANENALKKVPTDEDANNDNKSAVQIIVKENRTRFRKVFISSTYIVARKKTKSQPDDDSQSDSETATNDEAFKCDTCEKTFKTKHTLRAHKSNFHAKPKNIKCEECDKVFREESAYKVHLIKHRGINCATCGKKFSCNQNLKRHEKRHSDIRPYPCDQCPKSYVTLRELKVHMISHSGTKPYVCEVCGVTFLTTTHLQGHMRRHTGEKPYECKDCGKRFYVQYQLKDHIAMHSSDRPYKCDICGATFSRPKALKQHKHLHLPEKKFKCKICDKAYAQAAGLHSHMKSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-