Nscu015210.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- -
- Assembly
- GCA_947095585.1
- Location
- OX352764.1:19670777-19684167[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.9e-05 0.0048 18.4 2.1 1 23 533 555 533 555 0.97 2 18 1.2e-05 0.0021 19.6 0.4 1 23 561 583 561 583 0.97 3 18 0.00061 0.1 14.3 0.5 1 23 589 611 589 611 0.96 4 18 2e-05 0.0034 18.9 3.1 1 23 617 639 617 639 0.97 5 18 4.6e-05 0.0076 17.8 4.7 1 23 645 667 645 667 0.99 6 18 8.5e-05 0.014 17.0 5.7 1 23 673 695 673 695 0.97 7 18 4.2e-07 6.9e-05 24.2 4.3 1 23 701 723 701 723 0.98 8 18 1.5e-07 2.5e-05 25.6 2.4 1 23 729 751 729 751 0.97 9 18 0.0002 0.033 15.8 5.7 1 23 757 779 757 779 0.97 10 18 2.5e-05 0.0041 18.6 6.5 1 23 785 807 785 807 0.98 11 18 4.2e-06 0.00069 21.1 4.5 1 23 813 835 813 835 0.98 12 18 9.8e-06 0.0016 19.9 8.1 1 23 841 863 841 863 0.98 13 18 8e-06 0.0013 20.2 7.6 1 23 869 891 869 891 0.97 14 18 8.9e-07 0.00015 23.2 7.7 1 23 897 919 897 919 0.98 15 18 0.00028 0.046 15.3 9.5 1 23 925 948 925 948 0.95 16 18 0.00023 0.039 15.6 0.5 1 23 954 976 954 976 0.97 17 18 0.00034 0.056 15.1 4.5 1 23 986 1008 986 1008 0.98 18 18 1.2e-05 0.002 19.6 1.6 1 23 1014 1037 1014 1037 0.96
Sequence Information
- Coding Sequence
- ATGAATTCAGCAGATCTTTCAAATGCAGCTCCTGGCGAGTCATCATCGAATCCAAATGACTCTTCGCATTCTCAACAGCAAAGTCGGCATTCGCCTCAACAACAACAGCAACATCATCATCAGCAACAACAACTCGCTCATACGCGACATCCTCAACAACAATTGAATGAACATCCGCAACAACAGCATCAACACCAGACACTGCTGCAGCAATCAGTTCGCCAAAATGATACAAATCCAAATCAGGTGAGCGACAGTATTGGTGGAGGACCAGGAGTAGGAGCTATCAATCATCCTCTTGCTGGAAATGTTGTCAGTTCCACTAGTACAGTTCCAGCAGCAATTGAAGATACTCATCATCAGCAACAACAACAGGCGCCACCCCCGCCGTCGGAGCATCAGCACCACCACCACCACCATCAAACAACGCTTATACCAAATGCACAAAATCTCGGCAAGTACTGGGTAGTTACTAATCTCTTTCAGGGACACGGACAAGCTCCATATAATATTGGTGTAACGCCAACCAGTCCGGCAGTTCCTACATTACCGCCACCAATATCAACGCACGGTAGCCTTGCGCAGGCCGGATCCAACGCGCACTCGAAATCGTCATCCAAAACACCTGCTCCTGCGCACCTTACATCGATGGGTGGCCCAACGCCCCTTCAAATACCCAATCCAATGTTAACCAATTcagcaattgcccagcagcaacaacaacagcaccagccgcagcaactcccgaatggcactataatcacaccgcagcggcatccagtggatcagcaacaacaacagcagcagcagttgcatgtgcatgGAacgatgtcgtcagcggatgataatcgacacgtcgcgcagcatgctatgcagcagcagcaacaacaacagcagcaacagcagcagcaacaacagcagcagcagcaacaacagcagcaacaacaacaacaacaacagcagcagcaacaacaacaagacaataacgtcaaagaagaaaaacctttctctgcaaatggcaaactctcacagcagcagcaaatggtcgtccaacagcaacagcagcagcactcctcgtcgtcgtcatctatagtgccaacaaaagctgaggtTGGTAGTGGTATTCCAGCCGGTGCTTCGGTTAAAGAACATGAGCTTGGTAAACCACCACCCGGCATTGAAATGTACAAAGTAAACATTGAGGACCTCAGTCATTTGTTTTCATACCATGAAGTGTTTGGCAAAATCCATGGTGACGTTATGAACCATCAAATGGCAGCGCATACGGTACCGCATCCTACGAACACGCCAACAACAAATGCCGCCGTTGCGGCTGTAGTGGCGGCGTCCAATGCCGCAGCAGCTGTAACTACTCCAACCGCTGGAGCGTCGGCAACCCCTTCGACAACAACGACAAACCTAACAAGTACCTCAGCGACGGCGGGGGTCACAACAACTGTTACAGGTGGCGGCATAACCGGTACAGGCACTGCCACCGGAGAATTGCTAATGCCAAAAATGGAGGGCGGTCTGACGGGCGTTGATCCGAACACAATTACATTGGCACCCGATGGCACCCCGATAATGACGGGCACGCATGTGTGCGACATTTGTGGCAAAATGTTTCAATTCCGTTATCAGTTAATCGTGCATCGTCGCTATCACAGCGAACGGAAGCCATTCAATTGTCAGGTATGCGGTCAGGGTTTCACTACCTCGCAGGATCTGACCCGTCATGGTAAAATTCACATTGGCGGGCCAATGTTCACGTGCATCATCTGTTTCAATGTGTTCGCTAATAATGCCAGCCTGGAGCGGCACATGAAACGCCATTCGACCGACAAGCCATTTGCCTGTACCATTTGCCAGAAGACATTTGCCCGCAAGGAGCATCTGGATAATCATTTCAGAAGTCACACCGGCGAGACACCGTTCCGCTGTCAATACTGCGCCAAAACGTTCACACGCAAAGAGCACATGGTCAATCATGTGCGCAAGCATACCGGTGAGACTCCTCATCGCTGTGACATTTGTAAGAAGTCATTTACGCGGAAAGAACACTATGTTAACCATTACATGTGGCATACAGGGCAAACGCCGCATCAGTGCGATGTCTGCGGCAAGAAGTATACGCGCAAGGAGCACCTGGCCAATCACATGCGTTCCCATACAAATGACACGCCGTTTCGTTGTGAGATTTGTGGCAAGAGTTTCAGTCGCAAAGAACACTTTACCAATCACATTCTTTGGCATACAGGTGAGACGCCCCATCGCTGTGATTTCTGTGCCAAGACGTTTACTCGCAAGGAGCATCTTTTAAATCATGTCCGCCAGCATACCGGTGAGTCGCCACATCGTTGCACCTATTGTCTGAAGACATTCACGCGTAAGGAACACCTAGTGAATCATATTCGTCAACACACAGGAGAGACGCCATTCAAGTGTACCTATTGCACCAAGGCGTTTACCCGCAAGGATCACATGGTCAACCACATCCGTCAGCATACTGGCGAATCACCGCACAAGTGCACCTATTGCACAAAAACGTTCACGCGCAAGGAACACCTAACGAATCATGTCCGTCAGCATACCGGTGAGTCGCCACATCGGTGCAGCTACTGCAAGAAGACTTTCACTCGCAAGGAGCATCTAACAAATCATGTACGTCTCCATACAGGAGATTCACCACACAAGTGCGAGTATTGTCAGAAGACGTTCACAAGGAAGGAGCACTTGAACAATCACATGCGCCAACATTCAAGCGATAATCCTCATTGTTGTAATGTGTGCAATAAACCGTTCACACGCAAGGAGCATCTCATCAATCACATGTCACGTTGCCACACTGGTGACCGGCCTTTTGCGTGTGAAACATGCGGCAAATCATTTCCGCTTAAGGGCAATCTGCTCTTCCATCAGCGCAGTCACACCAAGGGTCAGGAATGTGAGCGACCGTTTTCGTGCGAGAAGTGCCCAAAGACTTTCATATGCAAGGGTCATCTCGTCTCCCACATGAGGTCGCATTCTGGCGAGAAACCGCATGCATGCACTCTTTGCAGCAAGGCCTTTGTAGAACGAGGTAACCTCAAGCGTCATATGAAAATGAATCACCCAGATGCGGTTATGCCGCCGCCTCCTCCGCCAATTCCGAATATATTGACTGCGATCAAACAGGAAATAAATCCAATAATACTACCCCATCAATCGCCAACAATGCACACAATTCAACAAATCACTTCAAATCCTGGCACCTCCAATGCAAATCCATTAcagttggcgacgtcaggtcttgtcccacttgtgacatcaacaataacttcacataatagtcaaaaacaacaacaacaacaacaccagcagcagcaacaacagcaacaatcccatcaacaacaacatcagcagcaacaccaccagcaacaagcacagcaccaacaacagcagcaacagcagcaacaacaacagcaacaacaacagcaacaacaacagcagcagcatcagcaacaactacaacagcaacaacaattgttgcagttatccattcaacaggcagctcatcatcagcaacaacaggaacaacatcgacaacaccaacagcagcagcaacaagcccatcatcaacaacagccacaatcatcagcccatccacaaccaccgccacaagtgccgatcgctttaatccaggccgatccaagtgcgctagcacgtgctgcaatgcaactccaacatttgccagcgaatgtTGAGCAACACCCAGCCGTCTATTAG
- Protein Sequence
- MNSADLSNAAPGESSSNPNDSSHSQQQSRHSPQQQQQHHHQQQQLAHTRHPQQQLNEHPQQQHQHQTLLQQSVRQNDTNPNQVSDSIGGGPGVGAINHPLAGNVVSSTSTVPAAIEDTHHQQQQQAPPPPSEHQHHHHHHQTTLIPNAQNLGKYWVVTNLFQGHGQAPYNIGVTPTSPAVPTLPPPISTHGSLAQAGSNAHSKSSSKTPAPAHLTSMGGPTPLQIPNPMLTNSAIAQQQQQQHQPQQLPNGTIITPQRHPVDQQQQQQQQLHVHGTMSSADDNRHVAQHAMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQDNNVKEEKPFSANGKLSQQQQMVVQQQQQQHSSSSSSIVPTKAEVGSGIPAGASVKEHELGKPPPGIEMYKVNIEDLSHLFSYHEVFGKIHGDVMNHQMAAHTVPHPTNTPTTNAAVAAVVAASNAAAAVTTPTAGASATPSTTTTNLTSTSATAGVTTTVTGGGITGTGTATGELLMPKMEGGLTGVDPNTITLAPDGTPIMTGTHVCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPPPIPNILTAIKQEINPIILPHQSPTMHTIQQITSNPGTSNANPLQLATSGLVPLVTSTITSHNSQKQQQQQHQQQQQQQQSHQQQHQQQHHQQQAQHQQQQQQQQQQQQQQQQQQQQQHQQQLQQQQQLLQLSIQQAAHHQQQQEQHRQHQQQQQQAHHQQQPQSSAHPQPPPQVPIALIQADPSALARAAMQLQHLPANVEQHPAVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -