Nscu005251.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- bab1
- Assembly
- GCA_947095585.1
- Location
- OX352762.1:1934827-1937125[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-11 1.3e-07 32.4 0.0 3 45 415 457 413 457 0.90 2 2 4.7 1.9e+04 -3.4 0.4 5 18 548 560 547 562 0.62
Sequence Information
- Coding Sequence
- ATGGGCGGCCCACCAACAACACTTGAGGGGCAAACTTACTGCCTGCGATGGAACAATCACAAATCGAATCTGGTCGAGATACTCGATGCTCTCATCAAAATGGAGAGCTATGTCGATTGTACAATTGTTGTTGACGATCAAGTGCAGTTCAAGGCGCATCGCGTGATATTGGCAGCGAGCTCGCCGTATTTTCAGTCGATTTTGCAGGATGTTCCCATGGATCATTGCAGTATACTGTTTCCAGGCGTGCAAGCATTCGAAATGCGAGCTCTTTTGGAGTACATGTATACCGGCGAGGTGAACGTCACTCAGTCGCAAATTCCTAAGATCATGAGAATTGCGGAGCAGCTCGAAGTCAAGGGACTTTTCGATATCACCGACTTAAAGGAAAGATTTACGAAATTCGATGAAAGCAACGGCGTTGGCGGCAGCAGTAGCCACAACCCGTATGCACCGCCGTCTGGACCAGCACCACCACCAGCATTATCAGCTGCATACTCCTCAGCAGCGACAACATCGTCAGCATATCTGGCAAATAGTAAAGATTCATCGGAGGCAATGCAATCGTCGCCAGTTATCTCGACCTCAACAAATATCTCACCATCAGCGGCTCCAACGAGTAGCTCATCGCCTCCACATACCACATACAAATCACCGTATGCGAATATTTACTCAAAATCTCCTGGACCCTCGTCGTCGTCATCATCAGCTCAACAACAGCAACCACAACCATCACAGCAATTACAATCACACGATCGTCAATGGCCAATCTCTCCGATTGCTGCTGCCATGCTAAGCTCTGTTTACGAATCGGCCCCAGACATGAACCCACTGAAACGGAAGAAGCTCTCGTCAATCTCATCGATGTTGATGAACCGTGACACACCGATCTTACGCAATGTTTTAGCTCAGACAACAACCGCTGATTCGTCGCAGCAGCCAATACCGCTTGTGCCGTCAAAAACGGAGAAATCCGATGCACCCATCAATGAGAGGTCTTCTTCGCCGTCTCGTGGTGCATCAAGTGGCTTCGTTGCCAGCCACACCACTTTCAATGGATCAGATTATGCCAATGACAAGAAATCGAAATACCACGAAGAACCTCACTCGCCATACACTGATCGTTCCTTTGAAGATGATGGACTTGAATGCCCACCCAATTATCCTGGTGATGCACGGTCCTTTGGTTCTTCGCAATCACAACAGAAACCTGAATGGAAGCGTTACAAACAATACACCCGAAATGACATTATGTCAGCCATTCAGTGTGTCCGCGATGGAATGAGTGCCCTTCAGGCTTCCCGTAAATTTGGTGTTCCCTCGCGTACATTGTATGACAAAGTAAAGAAAATGGGTATCACGACTGGGCGCCCAATGAATCGCACACTGAAGCGTAGCCCCAGCGTTGGGGGCAATTCGGCTGCATTCTCCTACTCACATGGCTATGGCCAATCCGATCCAGCAATGTCCTCATTGAATGACGGTAGCGAACGTGAAACAAACGAGAAACGACCAGAACATCATATCCCACCAACTATTCCTCACCCAGCTGCTGCGTTGCTGGACCATGCTTTTTTGCAGCAAGCGCTTGAAAATCGCGGTGGCAATATTGATGGTAGAGAGGCACTCCATGCAATGGCTCTTGCAGCTGCCGCTCATGCCGCTGTCAATCATGTCTCGACAAGCCCTGGCCCAAACGGCACTGCCCGCTCGCCAAGCCCCAGTTTTGCCATAAAATATGCACGTTCTCAGAGCCCTAACGGCCATATGTCGCGAGAGCGTGAAATAATAATGGAGCGCGAAAAAGAAAGACGCATGATCGATCACGAAATAGAATTGGAACGTGAACGTGAGCACGAAAAGGAGCGCATGATTGAGCGCGAACAGCGTGATCGTCGCAACCACCGCCATCATGAACATTATGATCGCGATGAAGAAGACGATCACGTGGAAGACCTCTCGATAGCCCGCAAGAATAGCGTTTGCTCGGATAGTCCACCACCGGCATATTCGCCACCATCACCACCACCCACTGTCGGAAGTGTCATTGTTCCACCCATGACAACCAAGTTACCTGCGCATAGCAGTGATGACTATACGGTCAACGAAGAACGTGCCATTTCGATGAAGCGAGAAATCATCGCCGAAGATCACCGAGACTGA
- Protein Sequence
- MGGPPTTLEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIVVDDQVQFKAHRVILAASSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEQLEVKGLFDITDLKERFTKFDESNGVGGSSSHNPYAPPSGPAPPPALSAAYSSAATTSSAYLANSKDSSEAMQSSPVISTSTNISPSAAPTSSSSPPHTTYKSPYANIYSKSPGPSSSSSSAQQQQPQPSQQLQSHDRQWPISPIAAAMLSSVYESAPDMNPLKRKKLSSISSMLMNRDTPILRNVLAQTTTADSSQQPIPLVPSKTEKSDAPINERSSSPSRGASSGFVASHTTFNGSDYANDKKSKYHEEPHSPYTDRSFEDDGLECPPNYPGDARSFGSSQSQQKPEWKRYKQYTRNDIMSAIQCVRDGMSALQASRKFGVPSRTLYDKVKKMGITTGRPMNRTLKRSPSVGGNSAAFSYSHGYGQSDPAMSSLNDGSERETNEKRPEHHIPPTIPHPAAALLDHAFLQQALENRGGNIDGREALHAMALAAAAHAAVNHVSTSPGPNGTARSPSPSFAIKYARSQSPNGHMSREREIIMEREKERRMIDHEIELEREREHEKERMIEREQRDRRNHRHHEHYDRDEEDDHVEDLSIARKNSVCSDSPPPAYSPPSPPPTVGSVIVPPMTTKLPAHSSDDYTVNEERAISMKREIIAEDHRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01051287;
- 90% Identity
- iTF_01051287;
- 80% Identity
- iTF_01051287;