Nscu000704.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- bab1
- Assembly
- GCA_947095585.1
- Location
- OX352765.1:14765367-14767485[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-17 5.6e-14 52.7 0.0 1 43 111 154 111 156 0.95 2 2 0.7 2.9e+03 -0.8 0.4 3 15 249 261 247 265 0.80
Sequence Information
- Coding Sequence
- ATGTTTGTGTTATTAGGAAACAGACAAACGGACGGACATTGGTTCAGTCTGTCAGGAGTTGGCGGTTTGATTTTTTTTGGACTGGGTGAAGTCATTCCACAAATATTGTTAAATCGCAAATGGTCCTCAGACAATAATTTCCTTCAAAACTTTGTTTATTTTCAGGCGAAACTAATGGAAACTAATGCATGGATGGGCGCTTCGACTTCCTCAATAGCTGCAGACAGTTACCAATACCAATTGCAATCGATGTGGCAAAAATGCTGGAATACCAATCAGAACCTAATGCATCATTTGAGATTTCGCGAACGTGGCCCTCTGAAGTCATGGCGACCGGAAACAATGGCAGAAGCCATTTTCAGTGTTCTCAAGGAAGGTCTTTCATTGTCGCAAGCCGCTCGCAAATATGACATTCCATATCCAACGTTCGTTTTGTATGCGAATCGTGTGCACAATATGCTTGGACCATCGGTGGATGGTGGAACTGATTTGCGGCCAAAGGGAAGAGGACGACCGCAACGAATACTGTTGGGCATTTGGCCAGATGAACACATAAAGGGCGTCATCAAGACTGTTGTCTTCCGAGATGCCAAAGATCTTAAAGATGAGGGTCTACATCTGCAATATGGAAGGCATTCGCCCGTCTATCCTTTTCAAGATGGCACACAACTAAATTACCCTGCGGTGGGAGGCACTTGTCCCAATGGTGGCATTCCAACACCGACCGGTGAGCAAATGTCTCAAGAGGCGACTGCAGCAGCTGTAGCCGCAGTCGCCCATGGCATTCGTCAGCAAATGCAAATGGCAGCTGCTGTACAGCAGCAGCAACAGCACCAGCACCAGAGCCAGCACCAGAGCCAACAACATCAGCACCATCCCGAGACGCAAACCAATTTATTCAATTTGCCTGCTCATTTACATGTTGCTGTAGCGGCTGCAGCCGGTGCGAGTGGTTGTGGTGGTGTTTCAGCCGGAGCTGCTGGCGGGGGCATTTCATTATCCACCAAACAAAGTTCTCCCGCTTCCAATGTAGCTCAAGGTGGTGCCCAAAATCCCAGCTGCGCCAGTTTGGGCTCATATCAGAGGCATTCGCAATCGCCGTGTTCGTCAGCAACATCAGTAATTACTGGACTTCCCGTTCTGCCAGGAATGGCAGGATTTCATATGGTTGGTGCAGCTGTTTCCAGTAGAACCGACACAGCATCGATCCTCAGTGGCAGTAGTAATAGCAGTAGTAGTCATAGCCATCAGCATCATCAAATGCAGCAACAACAACAACAACAACAACAACAACAGCAGCATCAACTTATCCACCATCAGCATCATCATCATCATCACCAACAGCAGTCCGATCATCACACATTTGGTTCCAGTTCTTCTTCGGTGCATCCGTCACAACAGCAATCTCAAGTCCACCATTCGTTGTCGGGCAGCAATATAAACAACAATAACAACAACAACTCCGCCTCCGCCTCCTCCTCCTCTAGAATACATCAATCTTCTTCTTCGCCAGCATCTGAATCGGCACATGACCTCCGGATGTGCAGTCCCGCAGAAAGTCTTATGAGTTCGCCATTAGTTGAAATGGGTCTTGATCCAGCGGGTAATTTGGGCCCCACCGGAGTCGGTGTTAGCGGTATGACATACAAGCCATCCCGTGGATACTCCTCGCCACGACCAGAGCATCTCTTCCAGGAGGATATCACAGATTTAGTTGGTGGAGCCACCAATACCACGACTACATCAGTGATGGCTGGCACAATGGAGCATTCAACAGTGTCGGTTCCAGTTTCGTCCTCTTCCACATCGTCGGCGTCACCGTCATCGATGACGGCGAGCAACATCAAAATCGAACCCATGTCTATGGGCGGTGGCTGA
- Protein Sequence
- MFVLLGNRQTDGHWFSLSGVGGLIFFGLGEVIPQILLNRKWSSDNNFLQNFVYFQAKLMETNAWMGASTSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSVDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKDEGLHLQYGRHSPVYPFQDGTQLNYPAVGGTCPNGGIPTPTGEQMSQEATAAAVAAVAHGIRQQMQMAAAVQQQQQHQHQSQHQSQQHQHHPETQTNLFNLPAHLHVAVAAAAGASGCGGVSAGAAGGGISLSTKQSSPASNVAQGGAQNPSCASLGSYQRHSQSPCSSATSVITGLPVLPGMAGFHMVGAAVSSRTDTASILSGSSNSSSSHSHQHHQMQQQQQQQQQQQQHQLIHHQHHHHHHQQQSDHHTFGSSSSSVHPSQQQSQVHHSLSGSNINNNNNNNSASASSSSRIHQSSSSPASESAHDLRMCSPAESLMSSPLVEMGLDPAGNLGPTGVGVSGMTYKPSRGYSSPRPEHLFQEDITDLVGGATNTTTTSVMAGTMEHSTVSVPVSSSSTSSASPSSMTASNIKIEPMSMGGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -