Nscu000530.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- lolal
- Assembly
- GCA_947095585.1
- Location
- OX352765.1:11585258-11595994[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-19 3.7e-15 56.5 0.0 2 45 620 664 619 664 0.96
Sequence Information
- Coding Sequence
- ATGTTAACATACATTTTTATGTTTTTActatatttgcagaccctttttacaacgaacccatgtcaacatccaatagttatacttaaagatgtccaatatgatgatcttaagacaatggttgattttatgtactatggcgaagttaacgtctcacaggagcagttgccgcacattcttaaaacggcagaaatgcttaaaatcaaaGGACTCGCTGAAATGCCCACCGATCCGGCCAATCTAACAAAATCGGAAAGTAAATCAACAGAGCAAGCAGAATTAGTTGGAGCAGTGCCTGTTGGATGTATAGCTGGTGCCGGTAGTGGTGGAAGTGCTGGAGGTGGCACTGGAAGTGGCAGTGGAGCTGATTCTATATGGGGAAGTGCAGAATCACAATTCGCGCCGCAACAGCAACAACAACAACCTCATCAGACACAATCGCATCACCACCATCAACAACAGCAACAACAACAGCAGCAACACATACAACATCCGCAACACCATCATCAGCAAAGTCAGACACAAACTCAATCTCATCATCAACTCAGACGAACCCCGTCTCCTTTGGGCTCTGGAGCTTCTCCAGCCACACGCCGGAAACGGCTACGAAAATCTTCAAACAACGGTTCCGGTGATCGCAATAATTCAGACGAACATAACACCTCAGTTGATACCGGAACGGGAAATATTAATCTGTCACAAATGAGTCAGTTGTCATTTGGAGGCGGTGCAACTGGCAGTGGATCAGTAGTTGGTGTTGCAAGTCACTCTTTACATACGACAAAAATTATCAAAGAATCAGCTAGCACTGATGTTGAGACACACCAACAGGATTCATCACCAGACAGTTTAGATGATGGCCACAGTCATGCACACTCCATGCAAATCAAACCAGAGGTAGACATAGGTGGCGTGCAACAGTCGATGCCACTTGATATATCTGGAGCTACAACACCTTCAGATCATGATGCGCCCAATGCCAGCTGCTCCCAATCACAATCTTCACATTCTGGTTTGCAATGGACGGTCGTTGATTCGAATTATCCACGATTTTCGATGTCAACTTGCCAATCTAATATTATCGGTAATGGTAACAACACAAACAGTGGCCACAATTCCAATGGCGGCGGCGGCGGAGCAGGAGATCCCAATCAAACGAATAATAACTCTAATGGTGGTAATGCGACAAATACATCCAATGATCATCATCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAGCAGCATCGTCACCAGCAGCAACAACAGCAACAAAATGTTTCAAACAATTCGAATGGCAATAGCAATGCATCGGTGGGAGTTGGTGGGAATGCACAGCAGCACCAACAGCAGCAGCAGCAACAACAGCAGCAACATACAGGCCATATACAAATGCATTATCAAAATCCATCGTATTCACCACAAATTATAGCCGTCAACAGTCTGGTCAGTGGCTATTCTCAAAATTTGTCAACACCAACGTCACCAAATGAATCGGGAATGGTGCAATCGGTTTACAGTCAGGGTCCAACACCAACGCAATCACCAGTTCATCAAATGACTGGTGTTTCGTCGCGACTGTCAACATCGACTGGCAGTAGTAGTAGCGGAGTTACGGGAACTGTTGCTGTTAATGCAGGAAATGGAGGAGCAAACGCTTCAGCAGTTGGTGGTGGTGCTGGAAGTGGCGGTACCTCGTCTGCTATAGTTGTTGGTGCAGGCGGAAGTAATGCTGCTAACGCCGCAGGAAGTGTCACTTCTGGTAACGCTGCCGTCAATGCAGCTGCTGGAGCACCAGCAGTTAAACGAAAACGATCCGTTAATCCGCAAGGCGATGAGAACTTTATACGCGCTCTCGAAGCGGTCCGATCCGGTGGAATAGGTTTCTGTAAGGCAGCGCGTCTCTATGGAGTCAACAATCGAACCCTCTGGCTGGAATATAAGAAACGTGGCTACCCTATCAGTCGTCCGAGCATTAAATCACGCGTTGTCAAACAAGAGAATCTTTCACCATCGTCTACACCCACCAATGAGGAGACCACAATCGAAAATTACGAGCACATGAATCAGTCTGCTATAAATATGCAAGTTCCTCCGACCTCAGAAACACCAACTCCGTCATTATTGTGCACGCCGCACACACATCCAATGGGCGTGATGAATTTCCTCGACACTAGGCATATGGAATTCCCCGGGGCGATTCATTCAATGTCTCGCCAGCGATATGTTGATACAACAGTTAATGTCAATCCCACAGCAATGAACTTACAAAGTATTAACTTCAATTCCATATAG
- Protein Sequence
- MLTYIFMFLLYLQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSESKSTEQAELVGAVPVGCIAGAGSGGSAGGGTGSGSGADSIWGSAESQFAPQQQQQQPHQTQSHHHHQQQQQQQQQHIQHPQHHHQQSQTQTQSHHQLRRTPSPLGSGASPATRRKRLRKSSNNGSGDRNNSDEHNTSVDTGTGNINLSQMSQLSFGGGATGSGSVVGVASHSLHTTKIIKESASTDVETHQQDSSPDSLDDGHSHAHSMQIKPEVDIGGVQQSMPLDISGATTPSDHDAPNASCSQSQSSHSGLQWTVVDSNYPRFSMSTCQSNIIGNGNNTNSGHNSNGGGGGAGDPNQTNNNSNGGNATNTSNDHHQQQQQQQQQQQQQQQQQQQQQHRHQQQQQQQNVSNNSNGNSNASVGVGGNAQQHQQQQQQQQQQHTGHIQMHYQNPSYSPQIIAVNSLVSGYSQNLSTPTSPNESGMVQSVYSQGPTPTQSPVHQMTGVSSRLSTSTGSSSSGVTGTVAVNAGNGGANASAVGGGAGSGGTSSAIVVGAGGSNAANAAGSVTSGNAAVNAAAGAPAVKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKSRVVKQENLSPSSTPTNEETTIENYEHMNQSAINMQVPPTSETPTPSLLCTPHTHPMGVMNFLDTRHMEFPGAIHSMSRQRYVDTTVNVNPTAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01051314;
- 90% Identity
- iTF_01051314;
- 80% Identity
- iTF_01051314;