Nscu000526.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- br
- Assembly
- GCA_947095585.1
- Location
- OX352765.1:11555071-11556575[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.5e-15 3.9e-11 43.6 0.0 2 43 287 328 286 330 0.93 2 3 0.0067 28 5.7 0.0 27 37 359 369 353 374 0.87 3 3 1.6e-17 6.4e-14 52.5 0.0 3 42 397 436 395 438 0.92
Sequence Information
- Coding Sequence
- ATGAATCACTTGAAGTGGATGGGTCACTCAGCAACTATATTCGATATACAAAAGAGTCTTAAGAGTGACCATCAGACCTGCGATGTTACCTTAGCTTGCAAAGGAAAATCGGTTAGGGCACATCGCTTTGTGCTATCTTCATGCAGTGATTTACTGCGAGACCTTTTGTCTGATGTTCCGGTTGGCGACGAGGCTACTGTCATAGTCCCAGACATAAAAGGTCTCCTCCTAGATAGCGTTCTTAGTTTTATATATCTGGGCGAAACCAGCCTCACATCGTCAAATTTATCTGACTTCCTGGAAACGATCAACGTTTTGGGTATTAAATCGGCTATCAGTTTTGAGTGTGCCAACAATAACACTATAACCAACACCAGCACTAGCAACAAGAACTTGACCGAAATACCAGAAATCGAGGATGATTTTATGGAAACTGATGTTCAACAGGAGATTATCAGTAAAGAAGATGAAGAGGAAGAAACAGTGGTTGAACAACCCGGAGTGCAAGACCTTGAATTTCTGGAAGTATACAACGAACCACAGAAGATAACATATTCTATTGAACACATAAACTCAAACCCTCCAAGTGGCAATGAATTCATTTTAACCGAAAACTCTGGCACGTTTACTCTTACGCAAAATACGAAAATGGAAGAGAATATCACAATGAGCAGCACAACCAATAGTAAACACGAGGTGGATTCTGAAGAAAGTGGCCAGCTAATAGAAGATTATACACCAGTACCAATAATAAAGGCAACAACAGAACTGGTTGAACCTTCTGACGAAAACACCGCGGCCGGTGACAGTGACGAATATAAAACTTATCAGCACTTTAATGATACCCAATCACAACGAAATGAAAATCTGGATAATGCTGTTAGCGCTGTAGTGGACGGAGGTATTAGTTTGCAGAAAGCAGCACAAAAATTTGCAATCTCTAAAACGGTACTATGGCGACGAGTAAAGAAACATCCTCTTTACATGAAAACACATCGCGAAAATCCAATTATAGCTTCGGCATGCGAACGGCTTAAGACTGGCGATTCCCTTAAGAGTATCAGTCAGGCTCTGGATATTCCTATGTCGACTCTGCATCGTCACAAAGTTCGACTAGCACAGGAAGGTCGTTTGCCAGATTACGTTACATTTAAAAAACGCTGTCCTTTGTCCAAAGAAGTTCTTAAAGACAAGCTGTCAAAGGCGGTACAAGCTTGCTTAAACAATGGAATGTCCCAGAATCATGCGGCCAATCTTTTTGAAGTGCCTAAGAGCACGTTATGGCGGCATTTGCAAAAGAGAATAGCTACCGCTGACCAAGATAACGTAGATAACATCAAGGAAGAAGTTATTCTATCGTAA
- Protein Sequence
- MNHLKWMGHSATIFDIQKSLKSDHQTCDVTLACKGKSVRAHRFVLSSCSDLLRDLLSDVPVGDEATVIVPDIKGLLLDSVLSFIYLGETSLTSSNLSDFLETINVLGIKSAISFECANNNTITNTSTSNKNLTEIPEIEDDFMETDVQQEIISKEDEEEETVVEQPGVQDLEFLEVYNEPQKITYSIEHINSNPPSGNEFILTENSGTFTLTQNTKMEENITMSSTTNSKHEVDSEESGQLIEDYTPVPIIKATTELVEPSDENTAAGDSDEYKTYQHFNDTQSQRNENLDNAVSAVVDGGISLQKAAQKFAISKTVLWRRVKKHPLYMKTHRENPIIASACERLKTGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPDYVTFKKRCPLSKEVLKDKLSKAVQACLNNGMSQNHAANLFEVPKSTLWRHLQKRIATADQDNVDNIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01051306;
- 90% Identity
- iTF_01051306;
- 80% Identity
- iTF_01051306;