Nscu013087.1
Basic Information
- Insect
- Nephrocerus scutellatus
- Gene Symbol
- -
- Assembly
- GCA_947095585.1
- Location
- OX352762.1:106631390-106648221[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-11 1.7e-07 32.0 0.0 1 38 584 622 584 627 0.89 2 4 1.3e-13 5.3e-10 40.0 0.1 2 39 639 676 638 679 0.94 3 4 1.5e-17 6.2e-14 52.6 0.0 1 45 693 738 693 738 0.98 4 4 8.3e-20 3.4e-16 59.8 0.0 1 43 745 788 745 790 0.96
Sequence Information
- Coding Sequence
- ATGAAGTTCGCAGCAATTCAAAATGGGCTTCTCCGAACTGCTGAACAGCTAAAGATTAAGGGTCTCTGTGAAACAGCTGAGAGTGTCGATGACACTTCCGATGCGGCTACAGCAACAATAACTGTTTCGGAAAATCTAACACAAACCGTTGTTGGGAATATTGTTAGTgcagcggcgatagcagcagcagcagggcaagcacaacaatcgccacagcaacaacagtgtggtggcagtggtggtaatggcaatacagcagcaggagcagtgctaacacatacaatacatacaactagtgcaaatgttggcataatcgctgcccacaacaataacaataacaacaacaacaatacagctattaatacaagtattggtgctgtagttgcaacaacacaactgcaaagaaaatcacgcataagaaaacgttcaaaatcaccagacatacatctgcaacagcatcagcagcagcagcagcagcagcagcaacaacaacaccagcaacaacaacaacaacaacaacaccagcagcagcagcaacatcatcatcaacaacaacagcagcaggcaattttaagtcaaaatcttaatactggagcaatagttagcttacaacagacatctgctggaacatatatacctgtcactggtggtcagacgataacgacaacagaaacaccgtctggaacacctcatcatcaacatcagcaacaacaacagcagcaacatcatcagcaacaactgcagcagcatcaacaacagcatcagcagacgcagcatcaccagcaacaacatcatcagcagcatcagcatccacaacaacAcacatcagaagaatccgACTCGGAGAAACCACCATTGCAGAAAATTTGCAAAACTGAAGCGTCCTCACCATCGTCGTCATCATCAAATAATGGTGGTTGCGGTGGCAGTGTAACAGTTTCACCTGGTACAGCGATCGTGACGCAAATTGTCGTGGCACGTGAAGGAAAAGATAAAAATATGACGAGTTTAGGCATGGGAATGAATGGAGGACTCCTCGGAGTACCAATGGGATTTTTAGATTTCGCCCCCGAACCACCAGCACCGTCGGCCACACCGGTCACTGTGACGGAGCATGTTGATTTGTCGTGCAATCCAAGTACTGATACCAGAGACTTATCAAATCCCACCGAACCGCTTGACATTGACAATCACTTGGAGCAACATATGATACAGCGACTTGATCAATCGCCGATGCATGCGATACACCATCAGACTGGGTCGACAGGTGATGAAAGTAATTCAAATATGATACAACATATTAAGAGTGAGGTGattgaggtgaaacaacaacaacagcatcagcaacatcatcatcaattgcatacgcaaactattgtacaaggacaatcccaacaacaacagcaacaacagtcgcatcagcagcaacagcatcagcagcagcagcagcaacaacaacagcatcagcagcaacaacagcaacatccacaacagacccatccggatatcaccggagcgacggtaATGGAAATTGATCCGAATAATATAAAACACGAACCAGGCATGATTATCACACCAGAAATTGTCAACATGATGACAACTGGGCATATGGATATGTACAACTCCGATACCAGTGAGGATTCTCTGATGATTGCGAACGGGTCTCCCAATGACAATAACGAGCCACATTATACCAATTTGGACCAGCAACACGATAAGCAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGTTTGACGAAAGCATCGGTGACGTATGGCATCCCATCGACAACGCTGTGGCAGCGGGCGCATCGCATGGGCATTGAGACTCCAAAGAAGGAAGGTGGCACAAAATCATGGAACGAAGATTCCCTAAATAGTGCATTGGAGGCATTGCGCACCGGCCAGATTTCAGCAAACAAAGCGTCCAAAGCATATGGAATTCCGTCCTCGACATTGTATAAAATTGCTAGACGCGAGGGTATACGATTGGCGGCACCATTTAATGCGGCGCCAACGACATGGACGCCAGAGGATTTGGAACGTGCGTTGGAGGCGATTCGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCGCGGAGTTTGGCATTCCGACAGGAACACTCTATGGCCGCTGTAAACGAGAAGGCATTGAGTTGTCACGTTCGAATCCTACACCATGGTCAGAAGATGCAATGAATGAAGCCCTGAACTCTGTTCGCGTCGGCCAAATGTCTATAAATCAGGCAGCAATTCATTATAATTTGCCGTACAGTTCGCTGTATGGTCGCTTTAAGCGTGGCAAATACGATGTGGCAAACACCAGCGGCACATCGATTAACAATACATCGGGCAACACATCGGGAAGCATTGAAATCATCGAACATAGCCAAGAGAATTCTTTGCACATGTTTcagcaacagttccagtacagtcctgcacagtcgaatcatcagccacagcaacaaccacaacagcaacaacaacaacaacagcaacaacaacaacatgttgtacacattcaacaacaacaacaacaaccaccaacacaacaacatcatcatcagcaacaacaacatatccaacaacaggatgtagttacttcaacCAGTCAAGTCCATACACAGGCTGGACAAATCCAACAGATCTATCATCATCACAGTACACCAGAGAGGAGTTGA
- Protein Sequence
- MKFAAIQNGLLRTAEQLKIKGLCETAESVDDTSDAATATITVSENLTQTVVGNIVSAAAIAAAAGQAQQSPQQQQCGGSGGNGNTAAGAVLTHTIHTTSANVGIIAAHNNNNNNNNNTAINTSIGAVVATTQLQRKSRIRKRSKSPDIHLQQHQQQQQQQQQQQHQQQQQQQQHQQQQQHHHQQQQQQAILSQNLNTGAIVSLQQTSAGTYIPVTGGQTITTTETPSGTPHHQHQQQQQQQHHQQQLQQHQQQHQQTQHHQQQHHQQHQHPQQHTSEESDSEKPPLQKICKTEASSPSSSSSNNGGCGGSVTVSPGTAIVTQIVVAREGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLEQHMIQRLDQSPMHAIHHQTGSTGDESNSNMIQHIKSEVIEVKQQQQHQQHHHQLHTQTIVQGQSQQQQQQQSHQQQQHQQQQQQQQQHQQQQQQHPQQTHPDITGATVMEIDPNNIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSLMIANGSPNDNNEPHYTNLDQQHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPAQSNHQPQQQPQQQQQQQQQQQQHVVHIQQQQQQPPTQQHHHQQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -