Nign028542.1
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- -
- Assembly
- GCA_029203775.1
- Location
- CP092097.1:11780473-11791210[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.37 30 6.2 0.7 1 11 1143 1153 1143 1156 0.90 2 6 2.1e-05 0.0017 19.5 1.7 1 23 1200 1222 1200 1222 0.95 3 6 2.1e-05 0.0017 19.5 1.7 1 23 1297 1319 1297 1319 0.95 4 6 0.015 1.2 10.5 1.8 1 23 1352 1373 1352 1373 0.90 5 6 0.00029 0.024 15.9 0.9 1 23 1379 1401 1379 1401 0.97 6 6 1.8 1.5e+02 4.0 0.0 5 20 1408 1423 1406 1425 0.91
Sequence Information
- Coding Sequence
- ATGGCGACCTTGACAGGCTTTAAGCAATCGATTAAAGCACGAGAGAAGCCGGTAAAGCAGATGGCAGTTCGAGTGCAGAATACAGAAGAACATTTCAGAACTTATCAACCACCTAGCCATTGGTCAAGAGTTATGGGTGATTCGACTGTCCCTGATCATTTCTTCTCTAAAATCCCTCGAGTTAGAagtctttttaaatatcatctaGGTTCGTTTGGAACAAGAGAAAAAGACTACTTTGAAACCAGTGTTGATTTAGTATTAGCTTCAGGTATTGCAATCGCTCATCCAAAAAATGTTGGGCCTGTCGTCTTtttaaatgaagttttttttcatCCTGCTCTACACTACACTCACGACACAAATATACCAATTGCAGAAATACTTCACTTATTAGGGAAGTCAGCTGCTTCTGTCCCACATAAAAACTTTACTGAATCTCCACCAACAACAAAATTATTCTTCATAGAGTTTGTTAGATTAAATCACATTAATCTTGACATAATCAATGAAACTGACATTGATCAAAAAATCAGAAGATATATGGATACCTGTTCATCTATTATAGATTTAAATCTACCAGACTCGTTGCGTTTTTTGATCAGTCTAGTAAAATCTGGTCAATTTCTAGACACGTATTATGagacaaaaattaaaagttttgaaaCTTTTGATCTTGAGCAACGAATCTTTACTGCTAATATTGATGCTATCGATATAAGAAAACTTTGGCCAATGATCAAACATTCGATCAGTCAGCTCTACGCAACTCCAGAGCTCATAATAAATCAATTGCTAATGATTAGTGAATCATCAGAAAATATGGCACTAAAGCCGCTTCTCTCCCAGGCTGCTTATAGAGGAATGACATCTCTGTTGGCAGTCATTGAAGCTATTTCAGTCTACAATAATCATATCTTTGGAATCAACAATAATCATATCCTTGAAATCAACAATCATCACTGGAATCAACTATCATATTACTGGAATCAACTATCATATCACTACTGGAATCAAAAATCATATCTCCGGAATCAAAACAGATAtctttatattatcaaaaaggAATTAGGCAAGGTTAGCACAACAAAAGATACCGTTATTCTCTTAGGATTTTCTCCTGTTTGTGATTTATCGGATGGAGAAATCAGCATTAATGGAGCTTATCCTATCATGAATTGTCCCATTATACAAGAGAATCCCAAGAGTCAGAAGTCAGGTTCATTTGGAACAAGAGAAAAAGACTATTTTGAAACTAGTGTTGATTTAGCATTAGCTTCAGGTATTGCAATCGCTCATCCAGAAAATGTTGGTCCTGTCTTTCTAAATAAAGCTTTTCATACTGCTCTAAACACTCACGACACAAATATACCAATTGCAGAAATACTTCACTTATTAGGGAAATTAAATCATATCAATCTTGACGTAACCAATAAAGCTGAAATTGATCAAAAAATCAGAAGATATATGGATACCTATTCATCTATTATAGATTTAAATCCATCAGACTCTGTTGCTTCATGTTACGGATTAATAGCAGCTCTAAGTACCAGAGCTGCAAAGTCTGATCTTGATTTTGCAGTAATGAGTTTTTTGATCAGTCTAGTTAAATCTGGTCGATTTCTAGACACATTTTAcgagacaaaaataaaaagttttgaaacTTTTGATCCTGAGCAACGAATCTTTACTGTTAATATTGATGCTAtcgatataagaaaattttggCCAATGAACAAACATTCGATCAGTTGGCTCTACGCAACTCCAGAGCTCATAATAAATCAATTGCTAATGATTAGTGAATTATCAGAAAATATGGCACTAAAGCCGCTTCTCCCCCAGGCTGCTTATAGAGGAATGATACCTCTGTTGGCAGGCATTGAAGCTATTTCAGTCTACAATAATCATATCTTTGGAATCAACAATAATCATATCTTTGGAATCAACAATAATCATATCCTTGGAATCAACAATCATATTACTGGAATCAACTATCATATCACTACTGGAATCAAAAATCATATCTCCGGAATCAAAACAgatgatgatgatgaagtcGATGGAGATCATCCTCCAATTGATTTCTCAGCATTTTTTGAAGACTTAGATGATGACAATGGTGATAAGGGAAGTCCTCCAGATGTAAAGCCTCCATCAAAGAAAACAAAGCGTCGTCGTCGACGATCTGACAGTAATGGTGATGATTCACATCAATCACCTTCAAAACGGAAAACCAGAGATGTTCCTCTTCAGCCAATTTCTCATCAGGATGATGTTCCAACTGATGAAGCAGAGATTATGTTACCTCCTCCTCTTCGAGATGATCGTGATGACTCTGCAACAACAGGACCTTCAGAATTTATTGAAGGAAGTAGTGAAGAAACTCGAGAAGATCTGACCATGGAGTCTGACACTATATCACATTCCAGTGACCAGGAAATGTTAGATGCAAATATACTGACAGTTACTGATTGGACAAGTGAATTGTCTCATTCAGATCCTATTCAATATAGGCCATTTCAGGGagagataaaagaaaatatcttaTCTGAAATAAATCGAACACTTGAGAAGGCTGCAAAGGGACTGTCAGGTCATGTCACGTCACGTCAAGTCAGGTCAAATCACATCACGTCAAGTAACATCAAGTCAGGTCAAATCACATCACGTCAAGTAACATCAAGTCAAGTCACGTCACGTCGAGTCACATCAGCCACGTCAGATCACAACACATCAGATCAAATAATGTCAAATCAAGTCACATACCATCAGATCAAGTCAGGTCAAGTCACATCAGATCAAGTCACATTAGGTCAAGTCACATCAGGTCAAGTCACATTAGGTCAAGTCACATCAGGTCAAGTCACATTACGTCAAGTAACGTCATGCCACATCAGGTCGTCACGTCACGTCACATCAGATCAGGTCAAGTACGTCAAGTCAAGTCTCATCGTGTCACATCACATCAGGTCGAATCACACGGAACTGGATGTTCACCGCCGAACCTGCACCTCGGCAAAAAACTGTTCAAATGCAACAAATGCGAAAAGTCATTTTCGTACAACACTTCTGGTCCAGCATAAAAGTTCACATAGCACACAGGAACCTGCACCTCGGAAAAAAACTGTTCAAATGCGAAAAGTCATTTTCGTACAACACTTCTGGTCCAGCATAAAAGTTCACATAGGTGAAAAACCGTTCAAGTGTGACACCACACAGGAACCTGCACCTCGAAAAAAACTGTTCAAATGCAAAAATGCAAAAAGTCATTTTCGTACAACACTTCTGGTCCAGCATAAAAGTTCACATAGCACACAGGAACCTGCACCTCGGAAAAAAACTGTTCAAATGCAAAAAATGCGAAAAGTCATTTTCGTACAACACTTCTGGTCCAGCATAAAAGTTCACATAGGTGAAAAACCGTTCAAGTGTGACACGTGCGGCATGTCGTTCACtctgaaaaCACCGGTGTCTGTTAGCACACAGGAACCTGCACCTCggaaaaaaaaaactgttcaaaTGCAAAAAATGCGAAAAGTCATTTTCGTACAACACTTCTGGTCCAGCATAAAAGTTCACATAGGTGAAAAACCGTTCAAGTGTGACACGTGCGGCATGTCGTTCACtctgaaaagtaatttaaacaaacactcctacgtgcatttcaaaaaaaaaccgTTCACGTACGATCTACGCACGAAATTGTTTAGCACCGGGTGTCTGTTAGCACACAGGAACCTGCACCTCGGAAAAAAACTGTTCAAATGCAAAAAATGCGAAAACACACAGGAACCTGCACCTCGGCAAAAAACTGTTCAAATGCGAAAAGTCATTTTCGTACAACACTTCTGGTCCAGCATAAGAGTTCACATAGGTGAAAAACCGTTTAAGTGTGACACATGCGGCATGTCGTTCACtttgaaaagtaatttaaacaaacactcctacgtgcatttcaaaaaaaaaccgTTCACGTACGATCTGCGCACGAAATTGTTTAGCACCGGGTGTCTGTTAGCACACAGGAACCTGCACCTGGGCAAAAAACCGTTCAAATGcaacgaatgcgaaaagtcgttttcCACCGGGTGTCTGGCCACGCACTGGACTGTGCACCTCAGCAGAAAACCGTTCGAGTGCAACATGTGTGAAAAGTCGTATTCGAAGAACACGTGGCTCCAGATCCACAAGACGGTGCACACAGGCGAAAAACCTTTCATGTGCGGTGCCGCGTTtagagtgaaattgtatttgcAGAAACATGTATCTTCATACCGGACAGAAAATGCCGGATCAGTGCGGCGTCCGTTTCTGCGACTCACATCGTGGATGCCGGCGTTAGGCTCCAGTGTTCACTTCGAGGCCGCCGGCTATAACCGGTGTCATGAGCGAAAGGGTTATTGA
- Protein Sequence
- MATLTGFKQSIKAREKPVKQMAVRVQNTEEHFRTYQPPSHWSRVMGDSTVPDHFFSKIPRVRSLFKYHLGSFGTREKDYFETSVDLVLASGIAIAHPKNVGPVVFLNEVFFHPALHYTHDTNIPIAEILHLLGKSAASVPHKNFTESPPTTKLFFIEFVRLNHINLDIINETDIDQKIRRYMDTCSSIIDLNLPDSLRFLISLVKSGQFLDTYYETKIKSFETFDLEQRIFTANIDAIDIRKLWPMIKHSISQLYATPELIINQLLMISESSENMALKPLLSQAAYRGMTSLLAVIEAISVYNNHIFGINNNHILEINNHHWNQLSYYWNQLSYHYWNQKSYLRNQNRYLYIIKKELGKVSTTKDTVILLGFSPVCDLSDGEISINGAYPIMNCPIIQENPKSQKSGSFGTREKDYFETSVDLALASGIAIAHPENVGPVFLNKAFHTALNTHDTNIPIAEILHLLGKLNHINLDVTNKAEIDQKIRRYMDTYSSIIDLNPSDSVASCYGLIAALSTRAAKSDLDFAVMSFLISLVKSGRFLDTFYETKIKSFETFDPEQRIFTVNIDAIDIRKFWPMNKHSISWLYATPELIINQLLMISELSENMALKPLLPQAAYRGMIPLLAGIEAISVYNNHIFGINNNHIFGINNNHILGINNHITGINYHITTGIKNHISGIKTDDDDEVDGDHPPIDFSAFFEDLDDDNGDKGSPPDVKPPSKKTKRRRRRSDSNGDDSHQSPSKRKTRDVPLQPISHQDDVPTDEAEIMLPPPLRDDRDDSATTGPSEFIEGSSEETREDLTMESDTISHSSDQEMLDANILTVTDWTSELSHSDPIQYRPFQGEIKENILSEINRTLEKAAKGLSGHVTSRQVRSNHITSSNIKSGQITSRQVTSSQVTSRRVTSATSDHNTSDQIMSNQVTYHQIKSGQVTSDQVTLGQVTSGQVTLGQVTSGQVTLRQVTSCHIRSSRHVTSDQVKYVKSSLIVSHHIRSNHTELDVHRRTCTSAKNCSNATNAKSHFRTTLLVQHKSSHSTQEPAPRKKTVQMRKVIFVQHFWSSIKVHIGEKPFKCDTTQEPAPRKKLFKCKNAKSHFRTTLLVQHKSSHSTQEPAPRKKTVQMQKMRKVIFVQHFWSSIKVHIGEKPFKCDTCGMSFTLKTPVSVSTQEPAPRKKKTVQMQKMRKVIFVQHFWSSIKVHIGEKPFKCDTCGMSFTLKSNLNKHSYVHFKKKPFTYDLRTKLFSTGCLLAHRNLHLGKKLFKCKKCENTQEPAPRQKTVQMRKVIFVQHFWSSIRVHIGEKPFKCDTCGMSFTLKSNLNKHSYVHFKKKPFTYDLRTKLFSTGCLLAHRNLHLGKKPFKCNECEKSFSTGCLATHWTVHLSRKPFECNMCEKSYSKNTWLQIHKTVHTGEKPFMCGAAFRVKLYLQKHVSSYRTENAGSVRRPFLRLTSWMPALGSSVHFEAAGYNRCHERKGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -